Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01339 ATGGAGCTAGCTTTGAGCTTAGGCGACACACCCAAAACCGTCTCTTTGGCCACAAAAAATGATTCAGTGAGTTTGTGCATAGCACTGGCTGATGACAAAAGGGGTTCTTCATATCCACCCGTTCAGCTCGACCTTCTTCCTTCAACACCAGTTCTTCCTTTTTCACACTCACACCTTCGAATTCCATGGCTCTCCGATGCACTGGGTATGGAACGTGTGACATCAGAGATTCCGGTGAGGGTGGTGGATGACACCGACGATGGTGCTGCACTTTCATCTCCCAACAGTGCAGTGTCATCTTTTCAGATGGATTATTGTGTCAGGAACAATAGAAAGTCTAGTGAAGGTGCCAGCGATGACGACGAAAATGGCTCATCAAGGAAGAAACTAAGACTCTCCAAACAACAATCAGCTTTCCTCGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCACTTGCAAAACAGTTAAATCTCCGTCCCCGTCAGGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAAGTGGATTGTGAGTACTTAAAGAGATGCTGCGAGAGTCTGACAGAAGAGAATAGGAGATTGCAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACATGTCAACCGTTTTTCATGCAGCTTCCAGCTACCACCCTCACCATGTGTCCCGCTTGTGAACGCGTCGCCACCAACACCGCCACCGGAGCCGCCGCCGCCGCCGCTTCCACCACCACCACCAATAATAATAATGCCTCTGCCCCCACCAACAATAATAGTGTTTCTCAAATCTCTGCTGCGATGTCTGTTGACAAGCCCAGAATATTGCCCTGA 867 0.4833 MELALSLGDTPKTVSLATKNDSVSLCIALADDKRGSSYPPVQLDLLPSTPVLPFSHSHLRIPWLSDALGMERVTSEIPVRVVDDTDDGAALSSPNSAVSSFQMDYCVRNNRKSSEGASDDDENGSSRKKLRLSKQQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFFMQLPATTLTMCPACERVATNTATGAAAAAASTTTTNNNNASAPTNNNSVSQISAAMSVDKPRILP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01339 288 CDD bZIP 176 215 - -
Gma03g01339 288 PANTHER - 33 262 - -
Gma03g01339 288 SUPERFAMILY Homeodomain-like 117 184 IPR009057 -
Gma03g01339 288 Coils Coil 189 216 - -
Gma03g01339 288 MobiDBLite consensus disorder prediction 256 288 - -
Gma03g01339 288 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Gma03g01339 288 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Gma03g01339 288 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Gma03g01339 288 MobiDBLite consensus disorder prediction 256 278 - -
Gma03g01339 288 MobiDBLite consensus disorder prediction 111 132 - -
Gma03g01339 288 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 33 262 - -
Gma03g01339 288 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Gma03g01339 288 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Gma03g01339 288 Gene3D - 119 188 - -
Gma03g01339 288 SMART HOX_1 125 187 IPR001356 GO:0003677
Gma03g01339 288 MobiDBLite consensus disorder prediction 113 129 - -
Gma03g01339 288 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01339 Gma-Chr3 39559599 39561403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01339 119 240 Homeobox Transcription Factor Family AT4G37790 79.508 1.47e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma03g01339 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01339 K09338 - gmx:100784703 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01339 03 39559599 39561403 Gma03g01339 03 39559599 39561403 ECH
Gma19g01404 19 43308779 43310580 Gma03g01339 03 39559599 39561403 GST
Gma03g01339 03 39559599 39561403 Gma02g01582 02 31994549 31997062 PCT
Gma02g01582 02 31994549 31997062 Gma03g01339 03 39559599 39561403 PCT