Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01323 ATGGATATCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAGCTTAAATGGTGGATTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTCGGTGAGGGCTGCCACTTCCTGCACTATGTTCCCGGTGGTTATAATGCAGTTGCCCATATGATGAATCTAACACCTGCAGCACCTCTTCCACCAACAAGAAATGTTGCAGCTCTGCCTCATGTACCTAATGGGTCTGCACCATCTGCCGTTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAACTTGGCAAACACATTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCCCTGGAGCAGGTCGTCTTGCTGGTCGAATGGAGCCTCCTGGTCCTGCCGCAAGTTTTGGTGCCAATTCCACAGCGAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAGGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACCCTGCAAATGTCTGCACCACCTAAAACAACCCCGGGTGTTCCTGGCGCACCTGCCTCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACGTTTGGAGATAGATGTCACTTTGCACATGGAGCTTCTGAATTGCGTAAATCAGGAGTATGA 888 0.473 MDIRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPLPPTRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPPGAGRLAGRMEPPGPAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPASHGSNFKTKLCENFAKGSCTFGDRCHFAHGASELRKSGV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01323 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 240 IPR036612 GO:0003723
Gma03g01323 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 294 - -
Gma03g01323 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Gma03g01323 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gma03g01323 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Gma03g01323 295 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Gma03g01323 295 MobiDBLite consensus disorder prediction 21 36 - -
Gma03g01323 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Gma03g01323 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Gma03g01323 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Gma03g01323 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Gma03g01323 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 294 - -
Gma03g01323 295 SMART kh_6 167 237 IPR004087 GO:0003676
Gma03g01323 295 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Gma03g01323 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gma03g01323 295 MobiDBLite consensus disorder prediction 1 36 - -
Gma03g01323 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Gma03g01323 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Gma03g01323 295 SUPERFAMILY CCCH zinc finger 99 131 IPR036855 GO:0046872
Gma03g01323 295 CDD KH-I 170 233 - -
Gma03g01323 295 Gene3D - 260 293 - -
Gma03g01323 295 Gene3D - 95 132 - -
Gma03g01323 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Gma03g01323 295 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01323 Gma-Chr3 39428907 39432336 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma03g01323 KH_1 3.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01323 - - gmx:100777939 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01386 19 43156991 43171868 Gma03g01323 03 39428907 39432336 GST
Gma03g01323 03 39428907 39432336 Gma02g01614 02 32827038 32832703 PCT
Gma02g01614 02 32827038 32832703 Gma03g01323 03 39428907 39432336 PCT