Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01322 ATGCAGAATTTGCCGGATTTGGCTTATCCAAAAAAAGAATTGGCAAGATTTGATGGTCAGAGTATCGAGCCAATTCTTTCCCTCTCTTTGCTGCTTGCTCCAAAACCCCTTATTAGGGTCACCGCTGTTTGGGGTTTTCTCTGCAATCTCTTGTACTCGAAGTTCGTTCCTTCTTCCGGATCTCAATCTATGGATATCCGCAAGAGGGGAAGACACGAAACCGGCTTCAGCTTAAATGGAGGATTCAAGAGATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCCGGTGGTTATAATGCAGTTGCCCATATGATGAATTTAACACCTGCAGCACCTCCTCCACCATCAAGAAATGTTGCAGCTCTGCCTCATGTACCTAATGGGTCTGCACCATCTGCCGTTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAACTTGGCAAACACATTGCTCCATCATTTGATGATCATCATGCCATGGGACCCCCTGGAGCAGGTCGTCTTGCTGGTCGAATGGAGCCTCCGGGTCCTGCCGCAAGTTTTGGTGCCAATTCCACAGCGAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAGGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACCCTGCAAATGTCTGCACCACCTAAAACAACCCCGGGTGTTCCTGGTGCACCTGCCTCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACGTTTGGAGATAGATGTCACTTTGCACATGGAGCTTCTGAATTGCGTAAATCAGGAGTATGA 1077 0.4633 MQNLPDLAYPKKELARFDGQSIEPILSLSLLLAPKPLIRVTAVWGFLCNLLYSKFVPSSGSQSMDIRKRGRHETGFSLNGGFKRSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPPPSRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHHAMGPPGAGRLAGRMEPPGPAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPASHGSNFKTKLCENFAKGSCTFGDRCHFAHGASELRKSGV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01322 358 ProSiteProfiles Type-1 KH domain profile. 231 295 - -
Gma03g01322 358 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Gma03g01322 358 SMART kh_6 230 300 IPR004087 GO:0003676
Gma03g01322 358 Pfam KH domain 234 296 IPR004088 GO:0003723
Gma03g01322 358 Gene3D K Homology domain, type 1 227 322 IPR036612 GO:0003723
Gma03g01322 358 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 220 303 IPR036612 GO:0003723
Gma03g01322 358 Gene3D - 158 195 - -
Gma03g01322 358 Gene3D - 323 356 - -
Gma03g01322 358 SUPERFAMILY CCCH zinc finger 162 194 IPR036855 GO:0046872
Gma03g01322 358 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 190 IPR000571 GO:0046872
Gma03g01322 358 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 325 349 IPR000571 GO:0046872
Gma03g01322 358 MobiDBLite consensus disorder prediction 80 94 - -
Gma03g01322 358 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Gma03g01322 358 SMART c3hfinal6 324 350 IPR000571 GO:0046872
Gma03g01322 358 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Gma03g01322 358 Pfam RNA-binding, Nab2-type zinc finger 102 122 - -
Gma03g01322 358 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 72 357 - -
Gma03g01322 358 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 72 357 - -
Gma03g01322 358 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Gma03g01322 358 MobiDBLite consensus disorder prediction 75 94 - -
Gma03g01322 358 SUPERFAMILY CCCH zinc finger 323 354 IPR036855 GO:0046872
Gma03g01322 358 CDD KH-I 233 296 - -
Gma03g01322 358 ProSiteProfiles Zinc finger C3H1-type profile. 324 351 IPR000571 GO:0046872
Gma03g01322 358 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01322 Gma-Chr3 39416120 39421351 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma03g01322 KH_1 4.9e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01322 - - gmx:100778470 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01322 03 39416120 39421351 Gma03g01322 03 39416120 39421351 ECH