Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01315 ATGGAGGATTTCAAGAAGAGAAAGCTGGAGCTGGACGAAGCAGGTGGCGACGGTGATTTTTCTTCCAAGGAAGAGCTTCGCTTCCTCATCGAACCTCTCGCTAAACCCCAGCTCGTCGATCTTCTTGCCAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTCCGTGGCTTGGCCTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAAGTGACAGGAAAATCCCGTGGCTATGGATTTATAACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATCGATGGGAGATTGGCTGTCTGTAATCTAGCTTGTGAGAGTCTAAGTGGAACAAGTAGTGCTCCTGATCTTTCCCTGAGGAAGCTTTACATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATTCTCCTTAACTATTTTGCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAGGGATACAAATGAATCACGTGGTTTTGGCTTTGTCACATACAAGACAGCGGAGGCTGCGAAGAAGGCCATAGATGACCTAGAAAAGACACTTGGGGGAAGAAATATAGTTGTAAAATATGCTGATTCCCAAAAAGGTAAAACTGGCCAGCCACCATTTCCTGCTGGAGTGGTTCCGATGGCAGCATTACCTATGAACCCAGGATATATGCAGCAGCCTGGAAAAGCTAATGTTAGTTCAAGGCCCCCAATCAATTACAGTTACCCCCAAACTGTAGCACCATATTCTGCACTTCCTTATCCAAACCCTCCCACTGCTCCCTCTCCTTATCCGACACAAGGGCAGATTCCTTATCCTCAAGTTTCTGCAAAGAAAGACCGACATGGGTTTCTGCCTACTCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1023 0.4467 MEDFKKRKLELDEAGGDGDFSSKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRAPSKLIDGRLAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIVVKYADSQKGKTGQPPFPAGVVPMAALPMNPGYMQQPGKANVSSRPPINYSYPQTVAPYSALPYPNPPTAPSPYPTQGQIPYPQVSAKKDRHGFLPTQPVGMNNYPYYYPKQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01315 340 Gene3D - 145 243 IPR012677 -
Gma03g01315 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 167 IPR000504 GO:0003723
Gma03g01315 340 MobiDBLite consensus disorder prediction 291 306 - -
Gma03g01315 340 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 18 340 - -
Gma03g01315 340 SUPERFAMILY RNA-binding domain, RBD 60 144 IPR035979 GO:0003676
Gma03g01315 340 CDD RRM_RBM24_RBM38_like 67 142 - -
Gma03g01315 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Gma03g01315 340 SUPERFAMILY RNA-binding domain, RBD 152 247 IPR035979 GO:0003676
Gma03g01315 340 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 18 340 - -
Gma03g01315 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 227 IPR000504 GO:0003723
Gma03g01315 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 135 IPR000504 GO:0003723
Gma03g01315 340 Gene3D - 58 144 IPR012677 -
Gma03g01315 340 MobiDBLite consensus disorder prediction 291 311 - -
Gma03g01315 340 SMART rrm1_1 159 231 IPR000504 GO:0003723
Gma03g01315 340 SMART rrm1_1 68 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01315 Gma-Chr3 39340414 39344546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01315 150 242 C2H2 Transcription Factor Family AT2G19380 35.484 1.68e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01315 K12741 - gmx:100776344 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01315 03 39340414 39344546 Gma03g01315 03 39340414 39344546 ECH
Gma19g01380 19 43093794 43097827 Gma03g01315 03 39340414 39344546 GST