Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01313 ATGGCTTCAGACGCAAAACTCTCATCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTTTtgctactcccgctacctctcttacttcttctgctactactgctaccactgttacttcttctTCTTCTTCCTCTTCAAGAAAAGGAAGAGGTGGTTCTGTTCAACCAGCTCAACCTCCAAGGTGTCAAGTTGAAGGGTGCGAAGTAGATCTGAGTAATGCAAAAACTTACTATTCTAGACACAAAGTTTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCCTCTTGACCTCTCGCTATGCTAGACTTTCTTCATCTGCTTTTGATCATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGGCTTCATACCCAAAACTTAGTCTGAGAAATTCACTTCCAACTCCTAGGTCATCCGAGCTAGCGCCTGGAAATCAAACCTCCACCCTCAGCTGGCACGGGAACTCGGAGACATCATCTGACCTTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTCGCCGGCCCGGGACATCCTCCAGGGGAAAGTTACACTGGGGTCACCACCTCGAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACCCAGCACCAAGTCTTGGGTTGAATAACATGGTAAATTTCCACGGGACGCCCATGACACAGCCTGCTGCATCATCTCATGGTGCATCAATCCATCAACTTCCAAATACCCCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCCGAGGGGGTCCCTGATCTAGGTCTCGGTCAGATTTCGCAGCCTCTCAGTAGCCAACTTCACGGTGAGCTGGACCTGTCCCAACAAGGCAGGAGACATTATATGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGTCACTTTAA 1080 0.4565 MASDAKLSSSESLNGLKFGQKIYFEDVGFATPATSLTSSATTATTVTSSSSSSSRKGRGGSVQPAQPPRCQVEGCEVDLSNAKTYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDHSGRGGNFLMELASYPKLSLRNSLPTPRSSELAPGNQTSTLSWHGNSETSSDLFLQGSVGGTSFAGPGHPPGESYTGVTTSSCALSLLSNQTWGSRNPAPSLGLNNMVNFHGTPMTQPAASSHGASIHQLPNTPWCFKGIDSGNCSPEGVPDLGLGQISQPLSSQLHGELDLSQQGRRHYMDLEQSRAYESAHWSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01313 359 MobiDBLite consensus disorder prediction 37 60 - -
Gma03g01313 359 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
Gma03g01313 359 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Gma03g01313 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 359 - -
Gma03g01313 359 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Gma03g01313 359 MobiDBLite consensus disorder prediction 37 69 - -
Gma03g01313 359 MobiDBLite consensus disorder prediction 187 211 - -
Gma03g01313 359 Pfam SBP domain 70 143 IPR004333 GO:0003677
Gma03g01313 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 359 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01313 Gma-Chr3 39312668 39316990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01313 16 359 SBP-box Gene Family AT2G42200 42.969 4.61e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma03g01313 SBP 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01313 - - gmx:100780949 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01313 03 39312668 39316990 Gma03g01313 03 39312668 39316990 ECH
Gma19g01377 19 43062240 43066624 Gma03g01313 03 39312668 39316990 GST