Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01307 ATGATGGCTTCTTCAAAGACCACCAACCCAATAACAACTACTACACAATTGGAACCACTCCCTCCACCtcaacaccgtcatcatcctcatcatcttcatcagttacaacaacagcaacaccaacatcattatcatcaacaaattcatgaccatcaAATTTCTTTTGGACTGATGCAATCCTCTTCTTCATCTTCCTCTATCCCCGGAAACTACCTCGGAAGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCTGACCCTTCTAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCCTCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGCTAGTTTCTCCACAAACAAGTGGATCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCTAACCCCCGAAACGAAACTGCTTCTGCCCCTCAACCACCCAAACCTGTCAAGCGAGAGGGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCCTATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTGAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTGCACTCTTGGGTGGAGAGCAAGGACTTCCTGTCACTATGAATACCATTAGCACGGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCAAGAGGAGAACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTTTTTGTTGACAATTGTTTGGCGCATTATGACCAAGTGATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTGTTCCATCTTGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGGCCATCTGAACTCATTAAGATTATTGTGAGTCAAATTGAGCCTCTCACCGAGCAACAAATATTGGGCATATGTGGATTGCAACAATCTACACAAGAAGCAGAAGAGGCTCTCTCCCAAGGACTCGAGGCTCTCAATCAATCTCTCTCGGACACTATAACATCAGATTCTCTTAGTTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCTGTGGCCATGAACAAACTCTCCACTCTTGAAGGTTTCGTGAGACAGGCTGATAATCTGCGGCACCAAACCATTCACCGTCTTCACCAGATTCTAACAACGCGTCAAGCAGCAAGGTGTTTTTTGGCCATAGCTGAGTACTTTCATCGTCTTCGAGCCCTCAGTTCATTGTGGTTGGCACGCCCTCGCCAAGAATAG 1476 0.4431 MMASSKTTNPITTTTQLEPLPPPQHRHHPHHLHQLQQQQHQHHYHQQIHDHQISFGLMQSSSSSSSIPGNYLGSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNETASAPQPPKPVKREGNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARTQGMFLGGGALLGGEQGLPVTMNTISTEAAMFDVEYARWQEENHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01307 491 Pfam bZIP transcription factor 200 233 IPR004827 GO:0003700|GO:0006355
Gma03g01307 491 MobiDBLite consensus disorder prediction 1 20 - -
Gma03g01307 491 Pfam Seed dormancy control 291 366 IPR025422 GO:0006351|GO:0043565
Gma03g01307 491 SUPERFAMILY Leucine zipper domain 200 242 IPR046347 GO:0003700|GO:0006355
Gma03g01307 491 SMART brlzneu 196 269 IPR004827 GO:0003700|GO:0006355
Gma03g01307 491 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Gma03g01307 491 MobiDBLite consensus disorder prediction 176 203 - -
Gma03g01307 491 Coils Coil 219 246 - -
Gma03g01307 491 MobiDBLite consensus disorder prediction 98 117 - -
Gma03g01307 491 MobiDBLite consensus disorder prediction 1 32 - -
Gma03g01307 491 ProSiteProfiles DOG1 domain profile. 273 487 IPR025422 GO:0006351|GO:0043565
Gma03g01307 491 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 87 490 - -
Gma03g01307 491 MobiDBLite consensus disorder prediction 98 203 - -
Gma03g01307 491 MobiDBLite consensus disorder prediction 126 167 - -
Gma03g01307 491 PANTHER TRANSCRIPTION FACTOR TGA9 87 490 - -
Gma03g01307 491 Gene3D - 199 249 - -
Gma03g01307 491 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 242 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01307 Gma-Chr3 39238086 39246234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01307 69 491 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 66.216 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gma03g01307 DOG1 7.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01307 K14431 - gmx:100815176 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01307 03 39238086 39246234 Gma03g01307 03 39238086 39246234 ECH
Gma19g01368 19 42971459 42978211 Gma03g01307 03 39238086 39246234 GST
Gma03g01307 03 39238086 39246234 Gma02g01649 02 34194365 34202492 PCT
Gma02g01649 02 34194365 34202492 Gma03g01307 03 39238086 39246234 PCT