Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01306 ATGGCGACGTACGCTGCGATGAAGCCCAATAAGCCTGGCTTGGAGGAGTCCCAAGAACAGATCCACAAGATAAGGATCACCCTTTCCTCCAAGCACGTCAAAAATCTCGAGAAGGTTTGTGGGGACTTGGTTCGTGGTGCAAAGGATAAGAGGCTCAGGGTTAAGGGACCTGTCAGGATGCCCACTAAGGTTCTTCACATCACTACCAGGAAGTCCCCCTGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTGCACAAGAGGGTGATTGACCTCTACAGTTCCCCAGATGTGGTTAAGCAGATTACCTCTATCACGATTGAACCTGGTGTGGAGGTTGAGGTGACCATTGCAGATGCTTGA 372 0.5027 MATYAAMKPNKPGLEESQEQIHKIRITLSSKHVKNLEKVCGDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01306 123 SUPERFAMILY Ribosomal protein S10 23 120 IPR036838 -
Gma03g01306 123 Hamap 30S ribosomal protein S10 [rpsJ]. 21 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma03g01306 123 PANTHER RIBOSOMAL PROTEIN S10-RELATED 3 122 - -
Gma03g01306 123 PRINTS Ribosomal protein S10 family signature 23 36 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma03g01306 123 PRINTS Ribosomal protein S10 family signature 58 73 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma03g01306 123 PRINTS Ribosomal protein S10 family signature 80 94 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma03g01306 123 ProSitePatterns Ribosomal protein S10 signature. 47 62 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gma03g01306 123 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 3 122 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gma03g01306 123 Pfam Ribosomal protein S10p/S20e 25 119 IPR027486 -
Gma03g01306 123 Gene3D Ribosomal protein S10 domain 7 122 IPR036838 -
Gma03g01306 123 SMART Ribosomal_S10_2 25 119 IPR027486 -
Gma03g01306 123 TIGRFAM uS10_euk_arch: ribosomal protein uS10 22 120 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01306 Gma-Chr3 39232380 39233813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01306 1 123 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 89.516 7.80e-77 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01306 K02969 - gmx:100500179 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01366 19 42964192 42965802 Gma03g01306 03 39232380 39233813 GST