Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01302 ATGGATTCGAATTCGCGTTACCATGTTCAGCAGCAACACCAACAACCCAATTCTGGGTTACTTCGATTTCGCTCTGCCCCTACCGCGAATTTCAAACAACAAGGCGAAGTTGCTGCCAATACTAATGGGAACGCATGGGAGGGCTCTGAACCATTTTTGAGATTCTTGAATTCCGGGGACACCCACGATACGACGTCGTCGCCTACCTTACGAGAATTCGTGGATAATAAGGTTTCTAATAATAGTAAACCTGCGAAGGAGTCATCAGCATCATCACCTCTGAGTCGCATGAATTCCCAACAGGGGTATAGCGCTTCTATGTTACCCTCTCGGAGTACTGTAACTTCAGCTATGATGTTGGGTTCTATGGGAATCGATCAAAGTGCGAAAAGCTTTGATTCCAATTCTCTCAGGCAAAGTAGCTTCCCTGCTGGCCATTTCTCTAACAACATCTCCTTTCAGAACGGGTATGATGCTATGAAAGGTGTTGGAAACTATAGTGGGGTCAATGGCAATGATGGTGAACTTAGTCTATCTATGAACAGAATGAAGAATCACATTAGCTTCTCATCAATAAGTCCTTCTTCTTCCTTGGGAATGCTATCACCAACCTCCAAAATGGGCACGGAGGGTATTAGGGTAACTAGACCTGAGGATGGGAGACAGGGAAGTTGCAATGGTGATGCTCGATATTATGGTCCTGGATTCCCTTATGCTTCTTGGAATGAGCCCTCACACCCCAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTTTGATTCTCAGAATGGAGAGCCAGGAAATCAAGTTCAAAGGCTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGAGATGTTTGCTATGGATAATTTGCTTCAGTTCTCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAGCAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGATCTTCAGAAACAATTCAAGACTCTGAGCGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAGAAGCAGATCGAGTTGCTTGA 1164 0.4381 MDSNSRYHVQQQHQQPNSGLLRFRSAPTANFKQQGEVAANTNGNAWEGSEPFLRFLNSGDTHDTTSSPTLREFVDNKVSNNSKPAKESSASSPLSRMNSQQGYSASMLPSRSTVTSAMMLGSMGIDQSAKSFDSNSLRQSSFPAGHFSNNISFQNGYDAMKGVGNYSGVNGNDGELSLSMNRMKNHISFSSISPSSSLGMLSPTSKMGTEGIRVTRPEDGRQGSCNGDARYYGPGFPYASWNEPSHPKRQRSSNDELLFDSQNGEPGNQVQRLSHHLSLPRTSSEMFAMDNLLQFSDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPTMDKQTSTAEMLDLALDYIKDLQKQFKTLSDKRAKCKCINMQKSEADRVA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01302 387 Gene3D - 311 383 IPR036638 GO:0046983
Gma03g01302 387 Pfam Helix-loop-helix DNA-binding domain 315 360 IPR011598 GO:0046983
Gma03g01302 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 359 IPR011598 GO:0046983
Gma03g01302 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 376 IPR036638 GO:0046983
Gma03g01302 387 SMART finulus 315 365 IPR011598 GO:0046983
Gma03g01302 387 MobiDBLite consensus disorder prediction 1 47 - -
Gma03g01302 387 PANTHER TRANSCRIPTION FACTOR BHLH130 12 379 - -
Gma03g01302 387 MobiDBLite consensus disorder prediction 256 271 - -
Gma03g01302 387 MobiDBLite consensus disorder prediction 58 108 - -
Gma03g01302 387 MobiDBLite consensus disorder prediction 1 108 - -
Gma03g01302 387 MobiDBLite consensus disorder prediction 238 271 - -
Gma03g01302 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01302 Gma-Chr3 39201065 39204811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01302 1 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 40.201 4.35e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g01302 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01302 - - gmx:100814652 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01302 03 39201065 39204811 Gma03g01302 03 39201065 39204811 ECH
Gma03g01302 03 39201065 39204811 Gma11g01191 11 10138137 10142740 ECH
Gma03g01302 03 39201065 39204811 Gma12g00492 12 4087312 4092196 ECH
Gma03g01302 03 39201065 39204811 Gma13g03052 13 44886022 44889226 ECH
Gma03g01302 03 39201065 39204811 Gma15g00309 15 2686442 2689889 ECH
Gma19g01359 19 42912228 42915776 Gma03g01302 03 39201065 39204811 GST