Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01301 ATGCCAATGCATCACCATCTTCTTCTTCTTCCCCTTCTCTTCTCTCTTGTTTCTCCGATGACCTCCCTCAACTCCGACGGCCTCTCCCTGTTAGCTCTCAAAGCGGCTGTGGACGCCGACCCCACCGGAGTTCTTACTTCCTGGTCGGAAACCGATGTCACCCCATGTCATTGGCCGGGAATCTCCTGCACCGGCGACAAAGTAACCCAACTCTCCCTCCCAAGAAAAAACCTCACCGGTTACATCCCTTCCGAGTTAGGCTTCTTAACCTCCCTCAAAAGACTAAGCCTTCCGTACAACAACTTTTCAAACGCGATTCCACCATCTCTATTCAACGCCAGGTCACTCATCGTTCTCGACCTCTCTCATAACTCTCTCTCCGGTTCCCTCCCTAACCAGCTTCGCTCTCTCAAGTTCCTTCGCCATTTGGACTTATCCGATAACTCCCTCAACGGCTCCCTCCCTGAAACACTCTCCGATCTCACCTCCCTCGCCGGAACCCTCAATCTTTCCTTCAACCACTTCTCCGGCGGGATTCCGGCGACTCTAGGAAACCTTCCGGTCGCCGTCAGCCTCGACCTACGCAACAATAATCTCACCGGGAAAATCCCGCAAATGGGGACCCTTTTGAACCAGGGTCCCACCGCGTTTTCTGGTAACCCTGGACTGTGCGGTTTCCCATTGCAGAGTGCTTGCCCTGAAGCGCAAAAGCCTGGGATTTTCGCTAACCCTGAAGATGGTTTCCCTCAGAACCCCAATGCGCTTCACCCGGATGGAAATTATGAGAGAGTGAAGCAGCACGGTGGTGGGTCCGTTGCTGTTCTTGTTATCTCCGGGCTCTCCGTCGCGGTTGGCGCGGTTTCGCTGTCGTTGTGGGTTTTCCGGCGAAGATGGGGGGGTGAGGAAGGGAAATTGGTGGGTCCAAAATTGGAGGATAACGTGGATGCGGGAGAGGGGCAAGAGGGTAAATTTGCTGTGGTGGATGAAGGGTTTGAGTTAGAGTTGGAGGATTTGCTGAGGGCTTCTGCGTATGTTGTTGGGAAGAGCAGGAGTGGGATTGTGTATAAGGTTGTCGGTGTCGGAAAAGGGTTGTCCTCCGCGGCGGCGAATGTGGTGGCTGTTCGAAGGCTGAGCGAGGGTGATGCCACGTGGCGGTTCAAGGAGTTTGAGTCTGAGGTTGAGGCCATTGCCAGGGTTCGTCACCCCAATGTCGTTCCTTTGAGAGCTTATTACTTTGCGCGTGATGAGAAGCTGATTATCACTGATTTCATTCGCAATGGAAGCTTGCACACAGCCTTACATGGTGGGCCTTCCAATTCATTGCCACCATTATCATGGGCAGTAAGGTTAAAAATTGCTCAAGAAGCGGCAAGAGGCTTGATGTATATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACATAAAGTCAACTAAAATCTTGCTGGATGATGAGCTCCATCCATACGTATCAGGTTTTGGACTTACTCGGCTGGGTTTGGGCCCGACAAAGTCTGCCACAATGGCACCAAAACGAAACAGCTTGAACCAATCTTCTATAACCACTGCAATGAGTTCAAAGGTTGCAGCTTCCTTGAACCACTACTTGGCACCCGAGGTGCGCAATACTGGTGGCAAATTCACTCAGAAATGTGATGTATATTCTTTTGGTATAGTGCTGTTAGAACTTTTGACAGGTAGAATGCCAGATTTTGGAGCAGAAAATGATCATAAGGTACTAGAGAGTTTTGTAAGGAAAGCATTCAAGGAGGAGAAGCCATTATCTGATATCATAGATCCAGCACTTATCCCTGAAGTTTATGCTAAAAAGCAAGTCATTGTTGCATTCCATATTGCTCTAAACTGCACTGAACTTGATCCAGAGTTGCGACCTAGAATGAAAACCGTGTCAGAGAACCTTGATCACATCAAAATACAGTGA 1944 0.4979 MPMHHHLLLLPLLFSLVSPMTSLNSDGLSLLALKAAVDADPTGVLTSWSETDVTPCHWPGISCTGDKVTQLSLPRKNLTGYIPSELGFLTSLKRLSLPYNNFSNAIPPSLFNARSLIVLDLSHNSLSGSLPNQLRSLKFLRHLDLSDNSLNGSLPETLSDLTSLAGTLNLSFNHFSGGIPATLGNLPVAVSLDLRNNNLTGKIPQMGTLLNQGPTAFSGNPGLCGFPLQSACPEAQKPGIFANPEDGFPQNPNALHPDGNYERVKQHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGEEGKLVGPKLEDNVDAGEGQEGKFAVVDEGFELELEDLLRASAYVVGKSRSGIVYKVVGVGKGLSSAAANVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYFARDEKLIITDFIRNGSLHTALHGGPSNSLPPLSWAVRLKIAQEAARGLMYIHEFSGRKYIHGNIKSTKILLDDELHPYVSGFGLTRLGLGPTKSATMAPKRNSLNQSSITTAMSSKVAASLNHYLAPEVRNTGGKFTQKCDVYSFGIVLLELLTGRMPDFGAENDHKVLESFVRKAFKEEKPLSDIIDPALIPEVYAKKQVIVAFHIALNCTELDPELRPRMKTVSENLDHIKIQ 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01301 647 PRINTS Leucine-rich repeat signature 116 129 - -
Gma03g01301 647 PRINTS Leucine-rich repeat signature 137 150 - -
Gma03g01301 647 Gene3D Ribonuclease Inhibitor 22 166 IPR032675 -
Gma03g01301 647 Gene3D Ribonuclease Inhibitor 167 234 IPR032675 -
Gma03g01301 647 SUPERFAMILY L domain-like 27 229 - -
Gma03g01301 647 Gene3D Transferase(Phosphotransferase) domain 1 424 647 - -
Gma03g01301 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 647 - -
Gma03g01301 647 Pfam Protein tyrosine and serine/threonine kinase 346 641 IPR001245 GO:0004672|GO:0006468
Gma03g01301 647 ProSiteProfiles Protein kinase domain profile. 340 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01301 647 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Gma03g01301 647 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 647 - -
Gma03g01301 647 SUPERFAMILY Protein kinase-like (PK-like) 345 641 IPR011009 -
Gma03g01301 647 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Gma03g01301 647 Gene3D Phosphorylase Kinase; domain 1 324 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01301 Gma-Chr3 39185336 39188807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01301 23 645 Receptor kinase-like Gene Family AT3G57830 59.624 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma03g01301 PK_Tyr_Ser-Thr 7.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01301 - - gmx:100778816 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01301 03 39185336 39188807 Gma03g01301 03 39185336 39188807 ECH
Gma19g01358 19 42898441 42901962 Gma03g01301 03 39185336 39188807 GST