Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01300 ATGGACCAAGCTCCGGGAGGATTGCGCGGATCCGTGCATGACGGCGCTACGCTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGTGCCGGCGCCGGAAAACGCTAACTCGTTCACCGCGCTGCTTGAACTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGAATCCGACAGCGCTCGGAAACCGCCTAATTGCCACGTCAGCGCGAACCAGAAACCCTACCTGCCCAACTCTTTCGGCAGCAATTTAACCTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCGAAGTTCTCTGTGTTCGCCGGCGAGAACTCGCCGCTTCCGCCGGAGGAGGCGTGCCTGGTTCCGGCCGGGACCGGTTCCGTTTCGAATTTGGATAGAGTGAAGAACGAGCCACAGGAGACCGATTCGAACCCGTGCTCGAGCTCGAGGCTGGGTTGCATTTCGGATCCCGCGGTGGAGAACAACAATCAGAGGACCGCCAAGAGAAAGGAGCGAGAGAAGAAGCTAACAGTTAAAGGATCGTCGAAGAAGAGTAAAAGCATCGCCGATGAGACCTCCGGTGACGGCGAGAAGCTTCCTTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAACGCTCGCATGAAGCTTTTGCAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGGACGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCTAGAATTGATTTCAGCCTCGACAGTTTATTGGCTACTGATGGGGCATCTCTAATGGATAATAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTCAATGGCAACCGGCAGCATTATCAACAGCAGTGGCAATTGGATGCATTCCACCAACCTCTCTGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGCTTCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1119 0.5317 MDQAPGGLRGSVHDGATLESIQFNEEIQGIMAPVPAPENANSFTALLELPPTQAVELLHSPESDSARKPPNCHVSANQKPYLPNSFGSNLTFPSNAALIERAAKFSVFAGENSPLPPEEACLVPAGTGSVSNLDRVKNEPQETDSNPCSSSRLGCISDPAVENNNQRTAKRKEREKKLTVKGSSKKSKSIADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDNNLPSMVTPLMWPEIPLNGNRQHYQQQWQLDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01300 372 Coils Coil 252 272 - -
Gma03g01300 372 Gene3D - 209 281 IPR036638 GO:0046983
Gma03g01300 372 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 372 - -
Gma03g01300 372 SMART finulus 218 268 IPR011598 GO:0046983
Gma03g01300 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 372 IPR024097 GO:0006355
Gma03g01300 372 MobiDBLite consensus disorder prediction 132 164 - -
Gma03g01300 372 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Gma03g01300 372 CDD bHLH_AtBPE_like 202 287 - -
Gma03g01300 372 MobiDBLite consensus disorder prediction 165 198 - -
Gma03g01300 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Gma03g01300 372 MobiDBLite consensus disorder prediction 132 198 - -
Gma03g01300 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01300 Gma-Chr3 39149387 39156771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01300 6 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.174 8.62e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g01300 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01300 - - gmx:100814124 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01300 03 39149387 39156771 Gma03g01300 03 39149387 39156771 ECH
Gma19g01356 19 42864651 42873611 Gma03g01300 03 39149387 39156771 GST