Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01297 ATGTTTCCAAACAATTATGATATTTCATCTGTTCAGCCTATTGTTGCTGCTTCTGAAGGAACCACAGTTTTTGGTGATCAGAGGAATGTTAGGGAAGAGCCCCGTACATATCTGGGAGTACAAAAGGTCACGGATAAACCAATCTATATAGGTCTAGTACGTGAGAATGATGCAACCAAGAGCGAGCGAACAAGTAAATTTGACAAGGAGGTAAATGCAGCAAGAGCTCATGACTTGGTGGCTCTGAAACGCGGGGGATCCAGTGCAAAAACAAATTTTCCAGAAAGTCACTACAAGACAGCATTGGAGGCTATGACGACTGATATGACACAAACGGATGTTGTGGATTCTGTCAGAATGTTAAGTTACAGCTTTGTGAAGTTCATATCCAAGTATCGTGGAGTCATCAGCAGAGATTCATCTACTGCGAAATGGGAAGCAATTTTTGTTACAAGCAGCGACGACAACAAATCCCTTGGATTATTCGACACAGAAGAGGAAGCAGCAAGGGCATATGATGTTGAAAGCATAAGGTTGAAAGGGTACGACGCCATTACCAACTTCAATATCAGGTTTTACAACGTTGAGGCCATTTTGAAAGGAGTAACTGATCCTGAAAAAGTAATATATCAGTCACAAGACACTGTCCCTGTGGAAGCAATGCAGCCTTTGGAAGTGCTTCAGAACATTATTGACCAAGGCTCCTCGAAAATGTTGTATGGTACTACTACTGATACCTTCGGAAGCAATGTATTTCAAAGGCCAATATCAGGAAACACAGAAGAACAGGAAAATTATGTGGCCTTTGCCTCACAAGGCCGTGAAAATGACCCTAATAGAAATTTGTCCTTAGTGACTGAGGGGCAACCTTTGGTCTATGGAAGAAGTGGTGAGGACGATGGTCAGGGAGGCTCATCAGCCAGCAGCATGTGTTTTGAGGATGAACTGACCAATGCTTATAAAAAATTCATAAAGAGGAGTTAA 984 0.4217 MFPNNYDISSVQPIVAASEGTTVFGDQRNVREEPRTYLGVQKVTDKPIYIGLVRENDATKSERTSKFDKEVNAARAHDLVALKRGGSSAKTNFPESHYKTALEAMTTDMTQTDVVDSVRMLSYSFVKFISKYRGVISRDSSTAKWEAIFVTSSDDNKSLGLFDTEEEAARAYDVESIRLKGYDAITNFNIRFYNVEAILKGVTDPEKVIYQSQDTVPVEAMQPLEVLQNIIDQGSSKMLYGTTTDTFGSNVFQRPISGNTEEQENYVAFASQGRENDPNRNLSLVTEGQPLVYGRSGEDDGQGGSSASSMCFEDELTNAYKKFIKRS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01297 327 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Gma03g01297 327 SUPERFAMILY DNA-binding domain 130 191 IPR016177 GO:0003677
Gma03g01297 327 SMART rav1_2 48 100 IPR001471 GO:0003700|GO:0006355
Gma03g01297 327 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
Gma03g01297 327 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Gma03g01297 327 Gene3D AP2/ERF domain 130 191 IPR036955 GO:0003700|GO:0006355
Gma03g01297 327 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM ISOFORM X1 27 200 - -
Gma03g01297 327 Pfam AP2 domain 130 174 IPR001471 GO:0003700|GO:0006355
Gma03g01297 327 MobiDBLite consensus disorder prediction 289 309 - -
Gma03g01297 327 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 200 - -
Gma03g01297 327 CDD AP2 130 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01297 Gma-Chr3 39116643 39119563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01297 67 205 AP2-EREBP Transcription Factor Family AT1G51190 45.000 5.97e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g01297 AP2 2.3e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01297 - K09285 gmx:102664631 635.95