Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01293 ATGGAGATAGAGAACGGTGACACCAGGTCCAAAAAGATGGAAGAGTATCAAGTCATAGAGCAAATTGGAAGAGGAGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAAATTCGGTTGGCCAAGCAGACAGAGAAGTTCAAACGTACAGCATTCCAAGAGATGGACCTGATTGCCAAACTGAATAACCCATATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGAGAACATAAAGAAAGCTCGAGGTTCATTTTTTCCTGAAGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTAGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCTAAGCGACTTAATGCAGAAGATCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTTGCAGATATACCTTATGGGTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTTCGCGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAAAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACTGCAGCTGAATTGTTAAGGCATCCGCTTTTACAGCCTTATGTTCTTCGCTGTCATAATGCATCATCTAATGTTCTTCCAGTATATCCCTTAGTTAATCCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCTAGTTTGGTAAATCGTTTGGAGCGGATTCATCCAATTGAGGGAAATGGAGATATACAGATAAGCAATCTTCCTAATGATGCGGTAACAATCTCAACCAGTGCAGAAGACAATCTAGAGACCAGGATGGCTGATCTTACCAGCTACATAGTGGAATCTTGTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAATGAGATCTCTTCTAAGAGTACACAAAATTCTATGCATGAAAAACAAAGATTTGCTGCTAAACATTTTCATAAATTAGAAGAAGACAACATAAATGTGGCGACCACAGAAGTTGAAGATGCTTCTTGCAATGAAGGTTTGGATAGTGCTGAAGCACAGAGGGAAGATTCGAACTTTGAGGACTCAGGTAAATCCACAATGTCCAGTGCAGGCAGTAGCACTGATAAAGATAAGTCCATCAATGAGGAAAGTTCATCACTGATTATGCATCCTATTAGGGTTGAACATGACACTGAATCTGGAAACCACTCGAAGAAAAGCAAAACCCCTGATGTATTTACAGAAGTCTCTCATATGAACTGCTTGACATCTTTTAGTAATGATGCACTTCCAGTTAAGGATGATGACATGGCAAACGTACACATTCTTTGCTCCACGCATAAAGAAGATGATAATGCGGTGGAGGTTGATCAGGCACCAAGAGGTGTTTCATTGAGTGTAATAACTGAAGTAGATGGTGATGAAACAATCAAGACTCCGGTGGATAGTCCCTGCCAGCAAAGAGCGGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTCGATGAGCTTGCTGGGGTGCTAAGACCATTTGGGAAAGAAGCTGTCTCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATGTCTGCCCAAAAGTTTAATGCTGAAGCCTAA 1947 0.4155 MEIENGDTRSKKMEEYQVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAFQEMDLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNVLPVYPLVNPKDKTRRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDIQISNLPNDAVTISTSAEDNLETRMADLTSYIVESCTSISGSKDGSTTSESTICSVCKEDFKSRPARETANNEISSKSTQNSMHEKQRFAAKHFHKLEEDNINVATTEVEDASCNEGLDSAEAQREDSNFEDSGKSTMSSAGSSTDKDKSINEESSSLIMHPIRVEHDTESGNHSKKSKTPDVFTEVSHMNCLTSFSNDALPVKDDDMANVHILCSTHKEDDNAVEVDQAPRGVSLSVITEVDGDETIKTPVDSPCQQRADALESLLELCAQLLKQDKLDELAGVLRPFGKEAVSSRETAIWLAKSLMSAQKFNAEA 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01293 648 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Gma03g01293 648 MobiDBLite consensus disorder prediction 395 418 - -
Gma03g01293 648 MobiDBLite consensus disorder prediction 295 316 - -
Gma03g01293 648 MobiDBLite consensus disorder prediction 451 513 - -
Gma03g01293 648 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01293 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Gma03g01293 648 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 486 - -
Gma03g01293 648 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 489 631 - -
Gma03g01293 648 CDD STKc_Nek 16 270 - -
Gma03g01293 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 489 631 - -
Gma03g01293 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 486 - -
Gma03g01293 648 MobiDBLite consensus disorder prediction 288 316 - -
Gma03g01293 648 Gene3D Transferase(Phosphotransferase) domain 1 98 322 - -
Gma03g01293 648 SUPERFAMILY Protein kinase-like (PK-like) 13 299 IPR011009 -
Gma03g01293 648 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01293 648 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01293 648 MobiDBLite consensus disorder prediction 399 416 - -
Gma03g01293 648 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Gma03g01293 648 MobiDBLite consensus disorder prediction 478 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01293 Gma-Chr3 39054485 39059232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01293 9 271 MAP Kinase Kinase Kinase AT3G13530 32.830 8.37e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma03g01293 Pkinase 2.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01293 K08857 - gmx:100777214 1278.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01293 03 39054485 39059232 Gma03g01293 03 39054485 39059232 ECH
Gma19g01346 19 42762181 42768568 Gma03g01293 03 39054485 39059232 GST
Gma03g01293 03 39054485 39059232 Gma02g01686 02 35849335 35857810 PCT
Gma02g01686 02 35849335 35857810 Gma03g01293 03 39054485 39059232 PCT