Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01291 ATGGCTGACCCCTACTCCAATTTCTTCTCTTCCTCTTCACCCTTGTTCCGTTTCAACCACAACCAATATTTCCCTTCTTCAAACCCTTCTCCACAACACCACAACCACAACTTCATCAACCACACAAAAACCAACGACACCACCACCACCACCGCCTTTTTCCACTACCACCAACACCAAACTACTACTGCTTTTTCTTCTTTTCCACCCTCACCTCCTTTGAGAGAAGAACTACCCCTCTTGAAGCTGAGTCCAACAAAGCAAGATGAGGAGGAAGTAGAGGACTTGGTGTCTAATTGCACTGGTGGAGCCATGGACGTGGAAGAGAGGATCCACCTTAAAGAGGAATTAGAAGATGATGAAGATGGAAGTACTAGTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTCCTCTCTTCTTCCTCTCATGAGATCACTGACAAAGACCAACATGGAGATCATGGTGCTGCTGAGGATTCTTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACcccttcccagattctcattggccctacccagttctcttgccctGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGAACCCAACCAACAGGAATGTTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGACCACCCAAGAGCGAAGCCTCTCAAAGACTTTAGAACACTCCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGTATTTGTGGCTCCGATTTCAAGCACAAGAGGTCCCTTAAAGACCATATTAAAGCATTCGGGAGTGGCCATGCAGCTTATGGCATCGATGGATTCGAAGAAGAAGATGAGCCTGCATCTGAAGTAGAGCAAGATAATGATGATTCCACCCAGTGA 1077 0.454 MADPYSNFFSSSSPLFRFNHNQYFPSSNPSPQHHNHNFINHTKTNDTTTTTAFFHYHQHQTTTAFSSFPPSPPLREELPLLKLSPTKQDEEEVEDLVSNCTGGAMDVEERIHLKEELEDDEDGSTSVTVALHIGLPSPSAAEMASVLSSSSHEITDKDQHGDHGAAEDSSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01291 358 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Gma03g01291 358 SMART c2h2final6 196 218 IPR013087 -
Gma03g01291 358 SMART c2h2final6 280 300 IPR013087 -
Gma03g01291 358 SUPERFAMILY beta-beta-alpha zinc fingers 262 300 IPR036236 -
Gma03g01291 358 Gene3D Classic Zinc Finger 195 218 - -
Gma03g01291 358 Gene3D Classic Zinc Finger 258 332 - -
Gma03g01291 358 MobiDBLite consensus disorder prediction 146 171 - -
Gma03g01291 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 300 IPR013087 -
Gma03g01291 358 PANTHER ZINC FINGER PROTEIN WIP2 1 357 IPR043584 GO:0003700|GO:0010468
Gma03g01291 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Gma03g01291 358 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01291 Gma-Chr3 39021640 39024510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01291 1 354 C2H2 Transcription Factor Family AT3G57670 62.791 1.74e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01291 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01291 - - gmx:100813583 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01291 03 39021640 39024510 Gma03g01291 03 39021640 39024510 ECH
Gma03g01291 03 39021640 39024510 Gma13g03043 13 44817029 44819284 ECH
Gma03g01291 03 39021640 39024510 Gma15g00318 15 2744930 2747071 ECH
Gma19g01345 19 42731793 42734337 Gma03g01291 03 39021640 39024510 GST
Gma03g01291 03 39021640 39024510 Gma02g01696 02 36133987 36136293 PCT
Gma02g01696 02 36133987 36136293 Gma03g01291 03 39021640 39024510 PCT