Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01284 ATGGATACTTGCAAGAAGTTCCCCTTGAAGCCATGGAAGAAAGGGCCAACAAGGGGGAAAGGCGGCCCCCAGAACGCCTCGTGTGAGTACCGAggcgttcggcagagaacttggggcaaatgggttgctgagataagagagccaaagaagagaactaggctctggcttggttcttttgccacagctgaagaagctgccatggcttatgatgaggctgcAAGGAGACTCTATGGTCCAGATGCATACCTTAATCTCCCCCACCTTCAACCAAGGTCCACTTCAACTACTATCACATCATCAGGGAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCAATGTTCCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCACCAGAGGCTACAGGAGCTTAAGAGAAATTCAGTTGTCAGTCAATCGCCGCCTAGTTCATCCAATGAACCAAAGGAAGAAACTCAGACTGTAGGCAGCAAAAAAGATGGAGAAAATCCACCAAAAGATGATCAAATGTTGTCAGAGGAGGTTCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGATGGGAATCCTTAAAGAAGAAAGAGAGCCAGAGAGAACTGATAGCTCAGGAAGTTCATCAACAATGCCTGAAGCTCTGTTGAGAGATGACAATGATCATCATTTGGGAGTGTTTTCTGACAATAGTGTTAACTGGGAGGCATTGATTGATATGCATGGAATTGCAGGTATTCAGGAATCAGAAGTCACTCAGCTTGAAGCATATGACCCAAATGATGATCTTACTTTCTCAACTTCCATTTGGAACTTTTAA 855 0.3696 MDTCKKFPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSTTITSSGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKRNSVVSQSPPSSSNEPKEETQTVGSKKDGENPPKDDQMLSEEVLGDLQEKPQIDLHEFLQQMGILKEEREPERTDSSGSSSTMPEALLRDDNDHHLGVFSDNSVNWEALIDMHGIAGIQESEVTQLEAYDPNDDLTFSTSIWNF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01284 284 MobiDBLite consensus disorder prediction 141 177 - -
Gma03g01284 284 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gma03g01284 284 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gma03g01284 284 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Gma03g01284 284 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Gma03g01284 284 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Gma03g01284 284 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gma03g01284 284 MobiDBLite consensus disorder prediction 160 177 - -
Gma03g01284 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 281 - -
Gma03g01284 284 MobiDBLite consensus disorder prediction 205 227 - -
Gma03g01284 284 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Gma03g01284 284 MobiDBLite consensus disorder prediction 141 159 - -
Gma03g01284 284 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gma03g01284 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01284 Gma-Chr3 38935826 38936680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01284 9 284 AP2-EREBP Transcription Factor Family AT3G57600 53.791 1.67e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g01284 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01284 - - gmx:113001170 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01284 03 38935826 38936680 Gma03g01284 03 38935826 38936680 ECH
Gma19g01339 19 42686031 42686879 Gma03g01284 03 38935826 38936680 GST
Gma03g01284 03 38935826 38936680 Gma02g01701 02 36290389 36291425 PCT
Gma02g01701 02 36290389 36291425 Gma03g01284 03 38935826 38936680 PCT