Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01277 ATGGGAAACTGCTGCGCCACGCCGTCCACGGACGAAACGGCGAACAAGAAGGGCAAAAAGGGAAAAAAGGAAAACCCCTTCGCGATCGACTACGGTTTCAACGCCACCGCCGCGAACGGGTCGAAGCTCACCGTTTTGAAGTCCCCGACGGGCCGCGAGATCGAGGCCCGCTACGAGCTGGGCCgtgagctgggccggggcgagttcggcataacctacctctgtacggacaaggggACCGGAGAGGAGCTGGCGTGCAAGTCGATCTCGAAGAAGAAGCTTCGGACGgcgatcgacatcgaggacgtgaggagggaggtggagatcatgcgccacttgccgcagcatgcgaacatcgtgaccttgaaggacacctacgaggatgacaatgccgttcatcttgttatggagctttgtgagggcggggagctcttcgaccgcatcgtggcgcgaggccactacaccgaACGCGCCGCCGCCGCCGTCACCAAGACCATCGTCGAAGTCGTTCAGATGTGCCACAAGCAAggtgtgatgcatcgggatctcaagccagaaaactttttgtttgcaaataaaaaggaaactgcggctttgaaggctatagattttgggttgtcggtgttctttaaaccagGGGAAAAATTTAATGAGATTGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTGAAGCGAAATTATGGGCCAGAAGTGGATATCTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTTCCACCTTTCTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATCATACGATCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCAAAAGACCTAGTGAAGAAGATGCTAGATCCTGACCCGAAGCGGCGGCTTACTGCACAGGACGTTTTAGATCATCCATGGTTACAAAACGCAAAGAAGGCTCCTAATGTTTCCTTAGGAGAAACTGTTAGAGCAAGGCTCaagcaattttctgtaatgaacaagcttaagaaaagagctttaaggGTGATTGCTGAGCATTTGACGGTAGAAGAAGCTGCCGGGCTAAAAGAGGGATTCCAGGTTATGGATACAAACAACAGAGGCAAGATTAACATTGATGAATTACGAGTAGGGTTGCATAAACTTGGTCATCAAGTTCCCGAATCAGATGTCCAAGCTCTTATGGATGCTGGTGATGTAGACGGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTGAGAAAGATGGGAAATGATGAGCATCTTCGCAAAGCCTTCCAATTTTTTGATCAGAACAAAAGTGAGTATATTGAGATTGAGGAGCTGAGTAGCGCCTTATCTGATGATCTTGACACAAACAGTGAAGAAGTTGTCAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAGGATAAGTTACGACGAATTTTCTACTATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGACAGTACTCACGAGAGAGGTTTGCCAGTCTCAGCCTTACGTTGATGAGGGACGGGTCATTGCATTTAAACAATGAAAAACAATGA 1605 0.3576 MGNCCATPSTDETANKKGKKGKKENPFAIDYGFNATAANGSKLTVLKSPTGREIEARYELGRELGRGEFGITYLCTDKGTGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPQHANIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKQGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPKRRLTAQDVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQVMDTNNRGKINIDELRVGLHKLGHQVPESDVQALMDAGDVDGDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDQNKSEYIEIEELSSALSDDLDTNSEEVVNAIMHDVDTDKDGRISYDEFSTMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHLNNEKQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01277 534 SUPERFAMILY EF-hand 345 522 IPR011992 -
Gma03g01277 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 513 - -
Gma03g01277 534 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Gma03g01277 534 SMART efh_1 399 427 IPR002048 GO:0005509
Gma03g01277 534 SMART efh_1 435 463 IPR002048 GO:0005509
Gma03g01277 534 SMART efh_1 471 499 IPR002048 GO:0005509
Gma03g01277 534 SMART efh_1 363 391 IPR002048 GO:0005509
Gma03g01277 534 Gene3D Phosphorylase Kinase; domain 1 60 143 - -
Gma03g01277 534 CDD STKc_CAMK 57 315 - -
Gma03g01277 534 Gene3D Transferase(Phosphotransferase) domain 1 144 324 - -
Gma03g01277 534 ProSiteProfiles Protein kinase domain profile. 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01277 534 Gene3D - 325 499 - -
Gma03g01277 534 SUPERFAMILY Protein kinase-like (PK-like) 57 325 IPR011009 -
Gma03g01277 534 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 15 513 - -
Gma03g01277 534 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Gma03g01277 534 Pfam Protein kinase domain 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01277 534 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Gma03g01277 534 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01277 534 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Gma03g01277 534 MobiDBLite consensus disorder prediction 1 21 - -
Gma03g01277 534 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Gma03g01277 534 Pfam EF-hand domain pair 434 497 IPR002048 GO:0005509
Gma03g01277 534 Pfam EF-hand domain pair 364 423 IPR002048 GO:0005509
Gma03g01277 534 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Gma03g01277 534 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Gma03g01277 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01277 Gma-Chr3 38847865 38852570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01277 1 532 EF-hand Containing Proteins AT5G19450 78.424 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma03g01277 Pkinase 4.3e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01277 K13412 - gmx:100808399 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01277 03 38847865 38852570 Gma03g01277 03 38847865 38852570 ECH
Gma19g01328 19 42576447 42580581 Gma03g01277 03 38847865 38852570 GST
Gma03g01277 03 38847865 38852570 Gma02g01715 02 36611255 36618786 PCT
Gma02g01715 02 36611255 36618786 Gma03g01277 03 38847865 38852570 PCT