Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01271 ATGGAATTTCTATGCTTGTTGTTGTATATACTGGTAGCTTGGTGTCTTTCAAGTTCTGAACTTGTTGGTGCTGAGCTTCAGGACCAAGATATATTACATGCCATCAACCAAGAGCTGAGAGTCCCTGGATGGGGTGATGGCAACAACTCAGATTACTGCAATTGGCAAGGTGTCAGCTGTGGTAACAACTCAATGGTGGAGGGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAACGTAACTCTAATGTCTGAGCTCAAAGCTTTGAAGCGGCTCGATCTTTCGAATAATAACTTTGATGGATCGATTCCTACTGCTTTTGGAAATTTATCTGATCTTGAAGTTCTAGATTTGACTTCAAATAAGTTCCAAGGTTCAATTCCACCTCAGTTGGGTGGTCTCACAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAGATACCAATGGAACTTCAGGGCTTAGAGAAACTGCAGGATTTTCAAATCTCTAGTAATCATTTGAGTGGTCTTATACCTTCTTGGGTGGGAAATTTAACCAATTTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTTGATTTCTGACCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAAGGCCCAATACCAGCAAGCATTTTTGTTCCAGGGAAGCTAGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGCACTTCCTAAAGAAATTGGGAATTGCAAAGCCCTTTCCAGCATTCGAATTGGAAACAACCATCTAGTAGGTACCATTCCAAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCCGATAATAATAATCTTTCTGGTGAGGTTGTGTCTGAATTTGCTCAGTGTTCTAATCTGACACTCCTGAATTTGGCTTCAAATGGGTTTACTGGAACAATTCCACAAGACTTTGGACAACTTATGAACCTTCAGGAATTAATTCTTTCTGGAAATAGCCTATTCGGTGATATTCCAACATCGATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCTCCCGGTTGCAGTACATGCTGTTGGATCAGAATTTCATTACTGGAGAGATCCCTCATGAAATTGGAAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAGGTATTCCTCCTGAGATTGGTCGCATTAGGAACTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTCCATGGACCACTGCCCCCTGAATTAGGAAAACTGGACAAACTTGTTTCTCTGGATGTTTCAAACAATCGGCTATCAGGTAACATCCCACCTGAGCTTAAAGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTCGGAGGTCCTGTGCCAACATTTGTACCATTTCAGAAGAGTCCCAGTTCAAGTTATTTGGGCAATAAAGGGCTTTGTGGAGAGCCTTTGAACTCTTCATGTGGAGACCTTTATGATGATCACAAGGCTTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAGGAAAAAGTAGCCAAAGATGCTGGGATTGTTGAAGATGGCACCAATGACAACCCAACTATAATTGCAGGGACGATTTTTGTTGATAATCTAAAACAAGCAGTAGATCTTGATGTCGTCGTTAAAGCAACTCTGAAAGACAGCAACAAGCTCAGCAGTGGAACTTTCAGCACTGTTTACAAGGCAATCATGCCTTCCGGGGTGGTCTTATCTGTTAGGAGACTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTAAGCAAAGTTTGTCATGAAAATCTAGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAATGGAACATTGGCTCAGCTTCTTCATGAATCTACCAGGAAACCTGAATATCAGCCTGACTGGCCCTCTAGATTATCCATTGCCATTGGTGTGGCCGAAGGGTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGATATCTCTTCTGGCAATGTTCTCTTGGATGCAAATTCCAAGCCAGTGGTTGCGGAGATTGAGATTTCAAAACTTCTAGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCTTTTGGTTACATACCACCAGAATATGCATATACTATGCAAGTCACTGCACCAGGAAATGTTTATAGCTATGGTGTTGTTCTGTTGGAAATCCTTACAACTAGACTACCAGTTGATGAGGACTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCGGTAAGAGGGGAAACTCCAGAGCAGATATTGGATGCTAAGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCCGCTTTGAAGGTCGCGTTGCTGTGCACTGACAACACACCAGCCAAACGACCAAAAATGAAGAATGTCGTGGAAATGCTTCGAGAGATAAAAGAAAATTGA 2667 0.4132 MEFLCLLLYILVAWCLSSSELVGAELQDQDILHAINQELRVPGWGDGNNSDYCNWQGVSCGNNSMVEGLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGSIPTAFGNLSDLEVLDLTSNKFQGSIPPQLGGLTNLKSLNLSNNVLVGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGRIPDDLGLISDLQILNLHSNQLEGPIPASIFVPGKLEVLVLTQNNFSGALPKEIGNCKALSSIRIGNNHLVGTIPKTIGNLSSLTYFEADNNNLSGEVVSEFAQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPTSILSCKSLNKLDISNNRFNGTIPNEICNISRLQYMLLDQNFITGEIPHEIGNCAKLLELQLGSNILTGGIPPEIGRIRNLQIALNLSFNHLHGPLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPSSSYLGNKGLCGEPLNSSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVEDGTNDNPTIIAGTIFVDNLKQAVDLDVVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHENLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANSKPVVAEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDAKLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKEN 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01271 888 SMART LRR_typ_2 110 133 IPR003591 -
Gma03g01271 888 SMART LRR_typ_2 134 157 IPR003591 -
Gma03g01271 888 SMART LRR_typ_2 206 230 IPR003591 -
Gma03g01271 888 SMART LRR_typ_2 447 470 IPR003591 -
Gma03g01271 888 SMART LRR_typ_2 158 181 IPR003591 -
Gma03g01271 888 SMART LRR_typ_2 86 109 IPR003591 -
Gma03g01271 888 SMART LRR_typ_2 326 350 IPR003591 -
Gma03g01271 888 SUPERFAMILY Protein kinase-like (PK-like) 606 885 IPR011009 -
Gma03g01271 888 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 886 - -
Gma03g01271 888 SUPERFAMILY RNI-like 165 487 - -
Gma03g01271 888 Pfam Leucine Rich Repeat 328 350 IPR001611 GO:0005515
Gma03g01271 888 Gene3D Ribonuclease Inhibitor 26 170 IPR032675 -
Gma03g01271 888 Gene3D Ribonuclease Inhibitor 230 519 IPR032675 -
Gma03g01271 888 Gene3D Phosphorylase Kinase; domain 1 579 685 - -
Gma03g01271 888 Gene3D Ribonuclease Inhibitor 171 229 IPR032675 -
Gma03g01271 888 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 7 886 - -
Gma03g01271 888 Gene3D Transferase(Phosphotransferase) domain 1 686 888 - -
Gma03g01271 888 ProSitePatterns Tyrosine protein kinases specific active-site signature. 730 742 IPR008266 GO:0004672|GO:0006468
Gma03g01271 888 SUPERFAMILY L domain-like 51 225 - -
Gma03g01271 888 Pfam Protein tyrosine and serine/threonine kinase 610 882 IPR001245 GO:0004672|GO:0006468
Gma03g01271 888 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Gma03g01271 888 ProSiteProfiles Protein kinase domain profile. 607 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01271 Gma-Chr3 38786185 38789515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01271 1 887 Receptor kinase-like Gene Family AT2G41820 72.360 0.0 1300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma03g01271 PK_Tyr_Ser-Thr 1.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01271 - - gmx:100805933 1743.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01271 03 38786185 38789515 Gma03g01271 03 38786185 38789515 ECH
Gma19g01321 19 42523770 42526697 Gma03g01271 03 38786185 38789515 GST