Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01268 ATGGCGTGCAACGGCTCTGGGTGCCAGTCCGGTGGCTGCTACAAAGACGAAGACGCAACATGTAAGCAACCACCCAAGTCCGAAGAAGCCGATTCAAAAAACCCTAGCAATGTCTGCATCAAGTGCAAGCTCAACGACGCCGTTTCGGGCTACGGCGGAATCGACGATGGTCGTTTCTGCGCCGATTGCTTCAAAACCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTCGATGCGAGTAGGGACCGGTCGTTGCCGGTGTTTGGTGTTGGAGTTGTGTTTATTGATGAGAGTGCCGTGTTGCCGATTCCTTCTAATGAAATGGAGGAAGCGGTTGAGGTTGTTAGTGAGGTTGTGTCGAGTTTGGCCCCACCAAGGAAGGAGTTGCATATTGTTCCTATTGAGACCGTTTATTCCTCGGATTCTGGTGATGGGAAGGAGAGGATAACCAAGGTAGTGAACACAGTGATTGATCCAACGGGAAGGGAGGATGTATTGCTCTGTCTGCGAATGTTGGCGCTACAAAAGGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAGggtcaaggatactcattacctgcagatatacagtatgttgatgctagatgggaagttcctgttgtacttcctctgcgtgattgttttgctcaagagatcaacatgctatgccaccttgatggTCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAGGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTCCCTTGGCAACTCGAAGACGCCAGAAGAGATATAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAACAGCCCACTCGACAAGAGTGAGATTACTGATTGGAGTAATATTGATAGCCACAGAAGTAGTGATATTTTTTATAATACCTGCTGTTCAAGTTGTCGGTTTCAGATACTTCCAAGTGATTCCACGGCAATGGAACAATTTTATATGGATTTGCCTCAGTCGGTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGGGAACAAATTCAAGATTACCTGCTCTCAGATGAGAAACGGTGCGTTAAGCCTTCTCCTCCTTCCCGAACAAAAAACACTGCTTTAAGAAGCAGGACTGGGATCGCACTTCAGAAGAAGTCAAGAGTAACATTAATTAGGGCACAGAACAAACAGCATTTCGAGCTTTGGGAAATGGGTGAACTATATCACTCACACGCTCCATTAGACATTAATTCTAGTGGGAGTGAGGAAAACTTGATCTCTCATTCACCAGAAGAAATTAAGCTTGAACCCATTAGTTTTGATGAAAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCGAGATTTTACTACACCAAATATGCCCACCAAATGGGCTTCGGCATCATGACTAGAACCTCAAAGAAGGGACATGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGAAATAACAAGAAGTGATGCATTAAGGAAACAATATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATGCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGAGATGAGGGATTGTAATGTTTCTGTTGCCTCTGATGATGGTTCTGTTTGTTGCTATAATGTCATTGAGGATGTGATAATAGAGGATAAACCTAAGGAATCCGTGGTTGAACATTTTGAACCTCATGGACAGAGGCTTGAACTGTTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTGAAGGATAACCTATGTAACTTAAAGGAGAAACTTGAAACATGGACAACCTTATTGAGGAAGTCATCTCAGGTGGATGTAGAGAAAAGTGTCATTGTTGCTGCGATAGTTAACATTGTTGCAGCTATTTGGCACTCTAGAAACAAAGCCGGGTTCGACAATAAACTGGTACAACATTCAAGAGCCATCGACATGGTTATTGCTAATGTCAACTTAGCCTGA 2361 0.4125 MACNGSGCQSGGCYKDEDATCKQPPKSEEADSKNPSNVCIKCKLNDAVSGYGGIDDGRFCADCFKTNLFGKFRFAVTSNAMITPTDKVLVAFSGGPSSRVALQFVHDMQERAQRNFDASRDRSLPVFGVGVVFIDESAVLPIPSNEMEEAVEVVSEVVSSLAPPRKELHIVPIETVYSSDSGDGKERITKVVNTVIDPTGREDVLLCLRMLALQKVASEFGYNRIILGSCISRIACHVISATVKGQGYSLPADIQYVDARWEVPVVLPLRDCFAQEINMLCHLDGLKTVKLSTDLCSSINGLVSSFVALLQEENPSRESTIVRTAGKLTPFQFNRIPEIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEITDWSNIDSHRSSDIFYNTCCSSCRFQILPSDSTAMEQFYMDLPQSVVGRAKQANNGNLSLLREQIQDYLLSDEKRCVKPSPPSRTKNTALRSRTGIALQKKSRVTLIRAQNKQHFELWEMGELYHSHAPLDINSSGSEENLISHSPEEIKLEPISFDENDACPVPRPGMVFSSEAEARFYYTKYAHQMGFGIMTRTSKKGHDGKVKYLILVCSEITRSDALRKQYCAARINLTLRKDGTYRINAATLGHSHELGSHHLLSSDIEMRDCNVSVASDDGSVCCYNVIEDVIIEDKPKESVVEHFEPHGQRLELLCNQFNSIAAVAAEFEDTSSFVKDNLCNLKEKLETWTTLLRKSSQVDVEKSVIVAAIVNIVAAIWHSRNKAGFDNKLVQHSRAIDMVIANVNLA 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01268 786 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 63 292 - -
Gma03g01268 786 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2 25 452 IPR019407 GO:0000049|GO:0002098|GO:0034227
Gma03g01268 786 Pfam Cytoplasmic tRNA 2-thiolation protein 2 298 392 IPR019407 GO:0000049|GO:0002098|GO:0034227
Gma03g01268 786 Hamap Cytoplasmic tRNA 2-thiolation protein 2 [CTU2]. 33 412 IPR019407 GO:0000049|GO:0002098|GO:0034227
Gma03g01268 786 Gene3D HUPs 38 397 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01268 Gma-Chr3 38711000 38719130 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gma03g01268 CTU2 6.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01268 K14169 - gmx:100804325 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01268 03 38711000 38719130 Gma03g01268 03 38711000 38719130 ECH
Gma19g01315 19 42407927 42412016 Gma03g01268 03 38711000 38719130 GST