Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01247 ATGGAACTAGGAGCCTTAGATCTCTTAGATAATGGTGGTAGAAGCATATCTCTAACAGAAACATACGAAAAGGTTGCTAGCGGGAAAAGTGGATGTTGTTGGGAACTGTTTGATGTTTACAGGCACCTCAAGTCTATTGGCTACATAATTGGCCGGCATGGTGTTGCCTGGAGTTTGAAGAGTATTAAGGTTCCCATAAACCTGCTACTCTTGAAGTCACAGAAAGAAATCGAACAACTAGAAGACATTGATTCCAAATCAGAGCTTTCCATCAATGAGTTATGGGTCTTGTTAACCATTACTCCTAAGACATTGGTAAATGATTTGAGGCCAGATTTTGATGTTTATCTTCCAAACAGTAGGTTTAGAAAGTCTTGTCCTGGTGATCCAAGTTTTCTACTGTACTTATCTAGGGTTCAACATCCACCATCTAGAGCAGAGATTGAAGCCCTTGAGAAACAATGTGGTGGCATTCCTTTGAAAATCTGCCGGGTCAGAGAGGGAAGGGTCAATTTCTTTTCCTCTGACAAGCGCTATCCACCTCCTCTTTCGTTCATTCAATTTCATCTCTGTAAGAACTTATGCCTTCAAGAAAGCTGGACAGACAAACAAAAGGAAATGCTAGAGGATGAGACTGGTTATGGATTTATATCTATCACTTCATTCTTTGTCAGTGCAGATCATCCTTGGTCCAGTAAAAGATGTTGGAGTCCAACATTTTCCTCCTCCAAACCCATGAGCTTGACAGTCATAGCTGTTGGGGATTGGATGATGAGGCCTTGTCGGGTACTACAGTTGGTGTGGCTTCATTGGTGGGCATACAAGGAAATATTGCTTCCTAAGAGAAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGTGCTTGGATCGGTGGTTCCTAACATTAGCAAGGCTTTGATTATTAAGGATGCTATTGAGTAA 942 0.4151 MELGALDLLDNGGRSISLTETYEKVASGKSGCCWELFDVYRHLKSIGYIIGRHGVAWSLKSIKVPINLLLLKSQKEIEQLEDIDSKSELSINELWVLLTITPKTLVNDLRPDFDVYLPNSRFRKSCPGDPSFLLYLSRVQHPPSRAEIEALEKQCGGIPLKICRVREGRVNFFSSDKRYPPPLSFIQFHLCKNLCLQESWTDKQKEMLEDETGYGFISITSFFVSADHPWSSKRCWSPTFSSSKPMSLTVIAVGDWMMRPCRVLQLVWLHWWAYKEILLPKRNRRKKLNERLFVLGSVVPNISKALIIKDAIE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01247 313 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54 1 177 IPR024337 -
Gma03g01247 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 313 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01247 Gma-Chr3 38392697 38397282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01247 278 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.789 1.55e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01247 K15326 - gmx:100811412 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01247 03 38392697 38397282 Gma03g01247 03 38392697 38397282 ECH
Gma19g01296 19 42157572 42161918 Gma03g01247 03 38392697 38397282 GST