Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01245 ATGGAGAAAACTCTCCTCAAGGATTTCGAGCTCCAGCACAAAAATCCCTCCGTCGAAGCCCTCCGCCGATGGAGATCCGCCGTCACTCTCGTCAAAAACCACCGCCGCCGCTTCCGCATGGTCGCCGATCTCGACAAGCGCGTCCAAGCCGAGCAGATTAAGCAGGGGATCAAGGAAAAAATTCGAATTGCTCTCTACGTTCAAAAGGCAGCATTACAATTTATTGATGCTGGTAATCGAGTTGAGTACAAACTATCAAGTGAGGCAAGAGATTCTGGTTTTGGTATTCATCCAGATGAGATTGCATCTATTGTTCGTGGTCATGATAACAAGACCTTAAATGATATTGGTGGAGTTGAATCCATTGCAAGGAAATTGTTAGTTTCGGTTGATGGAGGTGTCAGCGAAGAGAGTATAAATAGCAGACAACAGATTTATGGATTCAATCGTTATACCGAAAAACCTTCTAGATCGTTCCTGATGTTTGTGTGGGATGCATTGCAGGACTTAACTCTAATCATTCTCATGGTTTGTGCTGTAGTTTCTATAGTTATAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACTTATGATGGTGTGGGAATCATACTCAGTATATTCTTGGTTGTCGTTGTTACAGCTGTCAGTGATTACAAGCAGTCCCTGCAGTTCAGAGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCAATAGAGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTTTTTATCAGGATACTCTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATATAACTGAAGAAAAACCTTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAGACTCTAAACGAGGGAGGAGAGGATGAAACCCCATTGCAGGTTAAATTAAATGGAGTAGCTACTATTATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTAGTGTTGACAGTTAGGTTTGTGGTTGAAAAAGCGCTTCATGGTGACTTTGCCAGTTGGTCTTCAGATGATGCAAAGAAGTTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCAGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAACTAATGAATGACAAGGCACTTGTAAGGCATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACAAAATGGTGGTTACTAAAGCATGGATATGCGAAAAAGCCATGCAGATAAAAGGTACTGAGAGTGCAAACGAACTGAAAACATGTACATCTGAAGGAGTTATAAACATCCTTTTGCAGGCTATATTTCAAAACACTTCTGCTGAAGTAGTTAAGGATGATAAAAATGGAAAGGACACAATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTTGGATGCCTTTTGAGTGCTGATTTTGATGCGTATGCACAGCGTAGAGAGTATAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCCGTGGTTGTGGGTCTTCCTAATGGAGGAGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAACTATTGATTGCAATGGGGAAGTTGTTGATCTTCCTGAAGACGGGGCAAATAATGTCTCTGATGTTATAAATGCCTTTGCCTCTGAAGCTTTGAGAACTATTTGTTTGGCCTTCAAAGAGATAAATGAAACCCATGAACCCAACAGCATTCCTGATAGTGGCTATACTCTAATAGCCTTAGTAGGAATCAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTATGGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATAAATACAGCTAAAGCTATAGCTAAAGAATGTGGTTTACTTACCGAGGGTGGTCTAGCCATAGAAGGTCCAGATTTCCGTGACTTGTCTCCTGAGCAAATGAAGGATGTCATACCAAGAATCCAGGTGATGGCACGATCCTTACCGCTCGACAAGCATAAGTTAGTTACCAATTTGAGGAAAATGTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTCGCTAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCATGACTATTGTCAATGTTGTCAAATGGGGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGAAAAGACCCCCAGTTGCAAGAGGAGCAAACTTTATCACCAAACCTATGTGGAGGAATATCATAGGTCAAAGCATATATCAATTAATTATCCTTGGGATTCTAAATTTTGATGGGAAGAGGCTGCTCGGACTTGGTGGTTCAGATTCAACAAAAATACTCAACACGTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTATGGCGATAATTTTCGCCACCGCTGCATTTCAAGTGGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACTGTGCCTCTAAACTGGCAATTCTGGTTACTAAGTGTGGTAATCGGAGCATTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATGCTAGTAAGCAGCACCATGATGGTTATGAGGCACTGCCATCTGGTCCGGAGCTGGCATAA 3114 0.4162 MEKTLLKDFELQHKNPSVEALRRWRSAVTLVKNHRRRFRMVADLDKRVQAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYKLSSEARDSGFGIHPDEIASIVRGHDNKTLNDIGGVESIARKLLVSVDGGVSEESINSRQQIYGFNRYTEKPSRSFLMFVWDALQDLTLIILMVCAVVSIVIGIATEGWPKGTYDGVGIILSIFLVVVVTAVSDYKQSLQFRDLDKEKKKIFVQVNRDGKRQKISIYDIVVGDVVHLSTGDQVPADGIFLSGYSLLIDESSLSGESEPVNITEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLTVRFVVEKALHGDFASWSSDDAKKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNKMVVTKAWICEKAMQIKGTESANELKTCTSEGVINILLQAIFQNTSAEVVKDDKNGKDTILGTPTESALLEFGCLLSADFDAYAQRREYKILKVEPFNSVRKKMSVVVGLPNGGVRAFCKGASEIILKMCDKTIDCNGEVVDLPEDGANNVSDVINAFASEALRTICLAFKEINETHEPNSIPDSGYTLIALVGIKDPVRPGVKEAVQTCMAAGITIRMVTGDNINTAKAIAKECGLLTEGGLAIEGPDFRDLSPEQMKDVIPRIQVMARSLPLDKHKLVTNLRKMFGEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIIMDDNFMTIVNVVKWGRAVYINIQKFVQFQLTVNVVALVINFISACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILGILNFDGKRLLGLGGSDSTKILNTLIFNSFVFCQVFNEINSRDIDKINIFRGMFDSWIFMAIIFATAAFQVVIVEFLGTFASTVPLNWQFWLLSVVIGAFSMPIAAILKCIPVERDASKQHHDGYEALPSGPELA 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01245 1037 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 48 IPR024750 GO:0005516
Gma03g01245 1037 SFLD Haloacid Dehalogenase 432 806 - -
Gma03g01245 1037 SMART Cation_ATPase_N_a_2 115 187 IPR004014 -
Gma03g01245 1037 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
Gma03g01245 1037 Pfam E1-E2 ATPase 236 428 - -
Gma03g01245 1037 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1015 IPR023298 -
Gma03g01245 1037 Gene3D - 133 333 - -
Gma03g01245 1037 SUPERFAMILY HAD-like 449 859 IPR036412 -
Gma03g01245 1037 SFLD p-type atpase 432 806 IPR044492 -
Gma03g01245 1037 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 389 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma03g01245 1037 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 721 842 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma03g01245 1037 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 372 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma03g01245 1037 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Gma03g01245 1037 Gene3D - 165 1013 - -
Gma03g01245 1037 Gene3D - 447 799 IPR023214 -
Gma03g01245 1037 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 663 IPR023299 GO:0000166
Gma03g01245 1037 Gene3D - 460 658 IPR023299 GO:0000166
Gma03g01245 1037 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Gma03g01245 1037 Pfam haloacid dehalogenase-like hydrolase 448 768 - -
Gma03g01245 1037 CDD P-type_ATPase_Ca_PMCA-like 139 887 - -
Gma03g01245 1037 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma03g01245 1037 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma03g01245 1037 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma03g01245 1037 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gma03g01245 1037 PANTHER CALCIUM-TRANSPORTING ATPASE 45 1021 - -
Gma03g01245 1037 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Gma03g01245 1037 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Gma03g01245 1037 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Gma03g01245 1037 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Gma03g01245 1037 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Gma03g01245 1037 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Gma03g01245 1037 Gene3D - 16 77 - -
Gma03g01245 1037 PANTHER CATION TRANSPORTING ATPASE 45 1021 - -
Gma03g01245 1037 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01245 Gma-Chr3 38365039 38377734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01245 57 1034 Primary Pumps ATPases AT3G57330 73.517 0.0 1476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01245 K01537 - gmx:100798481 1994.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01245 03 38365039 38377734 Gma03g01245 03 38365039 38377734 ECH
Gma19g01294 19 42133406 42144133 Gma03g01245 03 38365039 38377734 GST
Gma03g01245 03 38365039 38377734 Gma10g01019 10 26991708 26996238 PCT
Gma03g01245 03 38365039 38377734 Gma02g01751 02 39071432 39083184 PCT
Gma10g01019 10 26991708 26996238 Gma03g01245 03 38365039 38377734 PCT
Gma02g01751 02 39071432 39083184 Gma03g01245 03 38365039 38377734 PCT