Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01240 ATGGATCACAGACCGAAATCCAAGGAGTCACTCTCTTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATAATGATTTTGATTATTACGGAAATAGTAGTCAGGATGAGAGCAGAGACAGCCAAGGTGTGGGGATTGCAAATCACAGTAATGGGAATGTGCATGAAAAGGAGGTGAATTTGTTCAAGAAGAGGAGGTGGTCTCTAAACAGTGACAACGAGGAGAAGAGCAGTTTTTACGGGACACACATGACGGAGGAGCGATATCGATCAATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAAGGGTACCTTGAATAGTCCTGCCCAAAATCAGGCTGCTGTTCCACTTGTGAAAAGCAACACGGGATTAAAAGCTCACAAGTCAGGGAATGAGCGCAGGGGAGGAGGATTACATGTGGCGGAGAGTACATCGGAATGGATGAATGATTCTGGTTCTCAAAAACCTGGAAACTACCGCAATGCAGATTTCTCGCCGCAATATGGCACTGATAGGATTATGTATGAACCTGCATCTTTGGATATCGGGGATGGAATCATTTACAAGATCCCTCCAGTCTATGATAAGTTGGCTGGAGCTCTAAACCTCCCAAGCTGCTCAGATATCCATGTTGAGGATTTATACTTAAAGGGTACTTTGGATTTGGGCTCCTTGGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGAGCAGGCATGGGAGAAGCAATACCACAATTTGAATCACTGCAGGCACGACTGAAGGTCATGTCAGCTTCTAATTCGGCTCGTAAGTTCAGTCTGAAAATGTCTGATGTTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCGGGAAGCATAAGGCGATCTATTTTGTCTGAGGGTGGAGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATGTGGAAAAGTTTGGGCAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTCACTATTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGGTCAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGACTGCCAGTATGCGCACCCGTAAACTAGCTAGAGACATGTTACTGTTCTGGAAACGAATAGACAAGGAGATGACAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAACTTTACCCAAGGAAGATGAAGATGCAGATGATCAAGATGCACTGATCGACTCTTCAGATGCTGTGCCCGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTCTAAGCAGAAAATGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATTCACTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACGCCCTCCACCATGCCAGTGGCATCCACAGTTCGGACACCTGAATTATTTAAAGGTGTTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTCGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCGGATGAGATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTGGCCCATTTAGCTGAGGAAAAAAATATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCATATTGGGGTGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCCGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGATTTCTGAGCTTACTACAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAACGAGAAGAGAATTCTGAATTTAATGAACATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAGTGAGGGAAGCACGTACCTTTACTTTGGAGAGATTCCGAATTCCCTTCCACCTCCTCCATTTGGGGAGATGGAGGATGTATATTATTCCGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATACAAAGTTCTGAAACTCTCAGTTCAGCTGTTGGTCGTGGTGTCTCCAGAGAATCTTTTCATAAACATTTTAATATTTTTAGACCGGAAAATGTTTATCGGTCTGTCTTCTCAGAAGATATGTGCAGTAAAAGTGGAAATTTTGGTTTTACCCATATGATGAATTTGTCTCCACATGAAGTGACATTTCTAGCTACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAAAAATTCATTGATGAAGCTGTAGACTTTCTAATGGAGACCATAGATGATGATCCAGAATGTAGTTACCTTGAGAAAGAAAAAGTGAGAGCAGTTACGCGAATGTTATTGGTGCCATCAAGATCTGAGACCCAGTTTCTTCAAAAAAAATGGCAAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCCCATCAAGATAGGGTGTTATCAAATGCCAGGCTTCTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCAGATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGGTTGCTTGTGGGGTTTGCACGTACATCTGATAATAATGTGCCTAGAAAGCCAGATAGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTCAGTTAACGTACAGTATTTTTGGGTCTTCTCCACCGATGCGGAATTTTGACCCTGCGAAATTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGTTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAGGTATTTTAGACTTGATGGATCATCCACTATTCAGGACCGCAGAGACATGGTCAAAGACTTTCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCATTGCTTCTAGATGATGTTCAATTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGAGGTATTCGGGTAAATGAAGACGGTGATGCATCAATGGAAGATCTAACAAGCTCTGTAGCCCAGGGTACCTCAGATAATGATCTTTCCATGGATCCAGAGGGTTCAAAGTCTAGTAATAAAAAGAGAAAAGCTTTCTCAGATAAGCCAACTTCAAGGCCAATGAATTCCCAAAAGATGAGTGAATTTAGTACTACGCCTATGGACGATGAATTGGATGTTGTTGATCCAGTGGGTCAGAAACCCAAGAGACCCAAGAGGATAAAGAAGAATGTGAATGAAAAGTTTGAAGATGCTTTTACTGGGATTGCTGCCCTGATCCCAGAGCAGACCCAATTTCCACCTCCACCAAGCGATTTTAGTGCCGGGGGTTCTAAAGCAGAATCAGGCCAAGACAACTGA 4575 0.4192 MDHRPKSKESLSYSTLFNLESLMNFQLPEQDNDFDYYGNSSQDESRDSQGVGIANHSNGNVHEKEVNLFKKRRWSLNSDNEEKSSFYGTHMTEERYRSMLGEHIQKYKRRFKGTLNSPAQNQAAVPLVKSNTGLKAHKSGNERRGGGLHVAESTSEWMNDSGSQKPGNYRNADFSPQYGTDRIMYEPASLDIGDGIIYKIPPVYDKLAGALNLPSCSDIHVEDLYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEAIPQFESLQARLKVMSASNSARKFSLKMSDVDLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKVWANIVRRDIPKHHRNFTIFHRKQLIDAKRVRMKVSRSLKWTRTASMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPKEDEDADDQDALIDSSDAVPDEEEDPEEAELKKEALKAAQEAVSKQKMLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSATSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGEMEDVYYSGGHNPISYEIPKLVYQEIIQSSETLSSAVGRGVSRESFHKHFNIFRPENVYRSVFSEDMCSKSGNFGFTHMMNLSPHEVTFLATGSFMERLLFSMMRWEQKFIDEAVDFLMETIDDDPECSYLEKEKVRAVTRMLLVPSRSETQFLQKKWQTGPSHAPFEALVVPHQDRVLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLLVGFARTSDNNVPRKPDSPHHLIQEIDSELPVSQPALQLTYSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVKDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEDGDASMEDLTSSVAQGTSDNDLSMDPEGSKSSNKKRKAFSDKPTSRPMNSQKMSEFSTTPMDDELDVVDPVGQKPKRPKRIKKNVNEKFEDAFTGIAALIPEQTQFPPPPSDFSAGGSKAESGQDN 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01240 1524 ProSiteProfiles DBINO domain profile. 356 473 IPR020838 GO:0003677
Gma03g01240 1524 CDD SF2_C_SNF 1189 1321 - -
Gma03g01240 1524 Pfam DNA-binding domain 351 472 IPR020838 GO:0003677
Gma03g01240 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 811 IPR027417 -
Gma03g01240 1524 MobiDBLite consensus disorder prediction 39 59 - -
Gma03g01240 1524 MobiDBLite consensus disorder prediction 1441 1456 - -
Gma03g01240 1524 MobiDBLite consensus disorder prediction 1499 1524 - -
Gma03g01240 1524 Gene3D - 1169 1419 IPR027417 -
Gma03g01240 1524 MobiDBLite consensus disorder prediction 1403 1425 - -
Gma03g01240 1524 SMART ultradead3 579 774 IPR014001 -
Gma03g01240 1524 Coils Coil 420 459 - -
Gma03g01240 1524 MobiDBLite consensus disorder prediction 1381 1483 - -
Gma03g01240 1524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1201 1385 IPR001650 -
Gma03g01240 1524 PANTHER HELICASE SRCAP-RELATED 16 1478 - -
Gma03g01240 1524 MobiDBLite consensus disorder prediction 1426 1440 - -
Gma03g01240 1524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 595 766 IPR014001 -
Gma03g01240 1524 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1478 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Gma03g01240 1524 MobiDBLite consensus disorder prediction 1381 1402 - -
Gma03g01240 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 813 1377 IPR027417 -
Gma03g01240 1524 SMART helicmild6 1227 1310 IPR001650 -
Gma03g01240 1524 Pfam Helicase conserved C-terminal domain 1201 1310 IPR001650 -
Gma03g01240 1524 Gene3D - 557 836 IPR038718 -
Gma03g01240 1524 Pfam SNF2-related domain 598 885 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01240 Gma-Chr3 38317062 38328926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01240 604 893 RAD5 or RAD16-like Gene Family AT5G43530 29.167 2.92e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma03g01240 SNF2_N 4.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01240 K11665 - gmx:100810344 2937.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01240 03 38317062 38328926 Gma03g01240 03 38317062 38328926 ECH
Gma19g01290 19 42087952 42099841 Gma03g01240 03 38317062 38328926 GST