Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01227 ATGGCGCCAAAACGAAAACCTTCGTCTCCAATCTCCATTGGTAACTGCGAGATTACGGTCGAGGCTAACCGCTTCACCTGCAACTCCGATTCAAACGGCGTCGTAATCTCTCTTCCCCGAAGCGGGAAGATCAAAGTGTCAGCAGTGGCTCCAAACCGTGGAAGCGCTTCTGAGGATTTGAGGTCTGGCGATAAAGAACACGAGTTCGTGCTAGTTAATCCTAAAGATGTTGATGCTATTAGCAAATCTTACCTTCAGGAAGTATTACAGATGTATACGACAGAGCTACCTGGAATGAATTATGCCGCGAATACAGGAAAGCAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGTACACTACTTATCAAATCCACTTCTGTTGGAAATTCAGGAAAGGTTATAGCTGCAATTACATACCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGCCATCTAATGTTTCTAGAGCTAAGGAAGAGACTTCAAAGTGTTGGTGTTCGTTCTATTTTATGCTGGGGGGACAAAGAATCAGAAGGATTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGGTACCAAAGGAAGGGCCCGCAGGTTACCCATAAAAGCTGATATTCAAAAATCATTATGCTTTCTTGGTGGTTCGACTCTCATGGTTTGCCACCTAGGGAAAGAATTATTAGCTGACGATGCTAACACTGTGAAGTATCTCCCCTCACAGTTTCATCAGAATTCCTTTACATCTGCCATTGCTGAAGATGAGCAGCTTGAATTTTCGGGAAAGTTACATGTGGATTTGAAATTTCCAGATAAATCTTCCCATAGAACAGAATCAAGTAAAAATCAACATGAAGCTTTGGTGAAAGAAGGATCTTCAACAGAATATGACAAACTCAGTGGTAGATTTGACAGTCACAATGCTAAGGAATGCTGCACTGGCATTTCTCCTTTTGCCAAAGTAAATGATGATAGACAGGCCAGTCCAGAAAGTTCACAGGATGGAATTGATGCTAATGTGAAGTATTCTTCTCAATCTACAAAAGGTGCAAAGAGGGCCTGGGAAGCCTCTTTGTCCTCATTGAAGTCAAAAAGGGTGAAGGGGAGCCAGATGGTTGACTATCAACCAGATTCTAGCTGCGGTTTTATCTTCGAGACTGATAAGGCCAATCCTTGTTTTGATGAAGTCCCTCATGATCCTTCAATTACAAAAAGTTCTGAAAAATGTATCGGGGATTATTTGCATTTAGAAGCTCCCATCAACATAGACTTTCCGTCAACTAAACAATGCTTTAGAATTATGTTGATGAATATTGCTGATGATGCTAAGAAAACACAGCTCACGAAGGTGATTGAAGACCTTGGTGGAAGTATATCACATGATGGAAGTATGACCACACACGTTGTCACAGGAAAAGTGAGGAAGACTCTGAATTTCTGTACCGCCCTCTGTTCAGGTGCTTGGGTGATTTCATCAAGTTGGTTAAAAGAAAGTTATCGTCAAGGAAGATTTGTAGATGAACTGCCTCACATACTGAATGATACAGATTATCTGCTGAAGTACAAATCTGATTTAAAAAATGCAGTTCTCCGGGCAAAAGCTAGCCCTGATGCTTTGTTTAAGGGTTATAATATATGTATTGCGGCTCATGTTCAAACTCCTAAAACATTGTCTGCAATTGTCAGGTCTGCAGGTGGTAATGTTATCAGTGGACTAGAAACGGTAAACGAAACATCAACAACAATCTTTGTGGCATGCGAAGAAGACACAGAAGAAGCAATGATAGCTGCACAGAAAGGTATATGGACTTTCAGTAGCGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCTCACAGTTTGCAGAGTCCTTATAA 1953 0.4137 MAPKRKPSSPISIGNCEITVEANRFTCNSDSNGVVISLPRSGKIKVSAVAPNRGSASEDLRSGDKEHEFVLVNPKDVDAISKSYLQEVLQMYTTELPGMNYAANTGKQSKFLERCVTNGKYRTLLIKSTSVGNSGKVIAAITYQIIPADTEYAEIPLAAVNAIYQRKGFGHLMFLELRKRLQSVGVRSILCWGDKESEGFWLKQGFVEIAQVGTKGRARRLPIKADIQKSLCFLGGSTLMVCHLGKELLADDANTVKYLPSQFHQNSFTSAIAEDEQLEFSGKLHVDLKFPDKSSHRTESSKNQHEALVKEGSSTEYDKLSGRFDSHNAKECCTGISPFAKVNDDRQASPESSQDGIDANVKYSSQSTKGAKRAWEASLSSLKSKRVKGSQMVDYQPDSSCGFIFETDKANPCFDEVPHDPSITKSSEKCIGDYLHLEAPINIDFPSTKQCFRIMLMNIADDAKKTQLTKVIEDLGGSISHDGSMTTHVVTGKVRKTLNFCTALCSGAWVISSSWLKESYRQGRFVDELPHILNDTDYLLKYKSDLKNAVLRAKASPDALFKGYNICIAAHVQTPKTLSAIVRSAGGNVISGLETVNETSTTIFVACEEDTEEAMIAAQKGIWTFSSEWFMNCVMRQELDLEASQFAESL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01227 650 MobiDBLite consensus disorder prediction 346 360 - -
Gma03g01227 650 CDD BRCT_PAXIP1_rpt6_like 560 640 - -
Gma03g01227 650 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 69 211 IPR016181 -
Gma03g01227 650 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 650 - -
Gma03g01227 650 MobiDBLite consensus disorder prediction 292 314 - -
Gma03g01227 650 Gene3D BRCT domain 445 557 IPR036420 -
Gma03g01227 650 CDD NAT_SF 133 192 - -
Gma03g01227 650 ProSiteProfiles BRCT domain profile. 556 639 IPR001357 -
Gma03g01227 650 SUPERFAMILY BRCT domain 453 535 IPR036420 -
Gma03g01227 650 Gene3D BRCT domain 558 649 IPR036420 -
Gma03g01227 650 SMART BRCT_7 446 523 IPR001357 -
Gma03g01227 650 SMART BRCT_7 558 637 IPR001357 -
Gma03g01227 650 Pfam BRCA1 C Terminus (BRCT) domain 560 634 IPR001357 -
Gma03g01227 650 Pfam BRCA1 C Terminus (BRCT) domain 460 519 IPR001357 -
Gma03g01227 650 Gene3D - 66 221 - -
Gma03g01227 650 PANTHER N-ACETYLTRANSFERASE 4 650 - -
Gma03g01227 650 MobiDBLite consensus disorder prediction 341 360 - -
Gma03g01227 650 ProSiteProfiles BRCT domain profile. 454 533 IPR001357 -
Gma03g01227 650 SUPERFAMILY BRCT domain 556 639 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01227 Gma-Chr3 38112789 38119075 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gma03g01227 BRCT 7.7e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01227 - - gmx:100806087 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01227 03 38112789 38119075 Gma03g01227 03 38112789 38119075 ECH
Gma19g01280 19 41889074 41895266 Gma03g01227 03 38112789 38119075 GST