Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01212 ATGGTTGCTTTGTTTTCCCCTCCAGTGTTCTCAACCAAGGGATGGCTCTTAGAAGAGGATCCATTAAGCTATGATGTGTCCTCTGAGTACTCATTTCCCTATCAATTTTATTCACCACAGACACAGATTGAGCTTGAAATTGAAAGGTCCACTTCTCCATCCCCTGAAGACCCTGCCATGGTCAAAAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGGTCAATCACTTGGTTTCTTCACTTCGTTCACTTCTTCCAGTGGCTGATCAAACGAAAAAAATGAGCATTCCGACTACAGTTTCGCGAGTCATAAAATACATACCCGAGTTACAACAGCAAGTGGAAGCACTATCTAAGAAAAAAGAGGATCTTTTGTGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGATTCTCAAAGGAGAATTTCCCACCACAACTCTGATTTTGTTGTTTCAACAAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCCTCTTATGAGGCTCACAAGGCTCCACTATCCGAGATCTTGCAATGTTTAGAAAATAATGGCCTTCTTCTGCTAAATGCTTCTTCCTCTGAAACCTTTGGAGGAAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAAACTCAGAGATTAGAGTCCGAGATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAAGGATTTTCTAA 726 0.4174 MVALFSPPVFSTKGWLLEEDPLSYDVSSEYSFPYQFYSPQTQIELEIERSTSPSPEDPAMVKKLSHNASERDRRKKVNHLVSSLRSLLPVADQTKKMSIPTTVSRVIKYIPELQQQVEALSKKKEDLLCRISRQLQGDAVNKDSQRRISHHNSDFVVSTSRLNDCEAVVHISSYEAHKAPLSEILQCLENNGLLLLNASSSETFGGRVFYNLHFQVEKTQRLESEILTEKLLSIYEKQRIF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01212 241 SMART finulus 67 119 IPR011598 GO:0046983
Gma03g01212 241 MobiDBLite consensus disorder prediction 49 74 - -
Gma03g01212 241 Coils Coil 110 130 - -
Gma03g01212 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 237 IPR015660 GO:0003700|GO:0006357
Gma03g01212 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 132 IPR036638 GO:0046983
Gma03g01212 241 CDD bHLH_AtORG2_like 62 135 - -
Gma03g01212 241 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 237 - -
Gma03g01212 241 Gene3D - 56 142 IPR036638 GO:0046983
Gma03g01212 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Gma03g01212 241 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01212 Gma-Chr3 37941536 37943827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01212 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.800 1.39e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g01212 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01212 - - gmx:100803424 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01266 19 41740635 41747739 Gma03g01212 03 37941536 37943827 GST