Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01178 ATGCCTTACACGGTCCGAGAGAACCTCTCGATCGGGAACATCGGCGACGCGGCGGAGATTCTCGAAAACGGCGCCGCTCAGAGCGTGACGCACATCCTCTCCGTCCTCAGCTCCGCCTCTATCTCCTTCTTCTCCGAATGGAAAACCACTCTCTCCATCCCCGCCATGGAGATCACCAAAGTCCACGTGGCGGACGCCGCCGCCAAATCGGCTCTCCCGCCGGAGAAGCTCCTCTACTCGCTCGAGTACGCCGGCCGCGACCTCAAGCTCGTGCGCATGGCCGTGCCTCTCAGAGACACCGAGAAAGATGACTTGCTCGATTACTTGGAAGTCTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTTCACTGTTTCGCCGGAGTTTCCAGAAGCGCGGCGATTATTACGGCGTATTTGATGAGAACCGAACGTCTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATTTGTTTGTCCCAATGATGGTTTTCTTGAGCAGTTGAAAATGTTTGAGGGGATGGGTTTCAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAAATACTATATGAAAATCATTTCTCAGGGTTGAGGATAGACAGTTCCAAACTTGGTGCAGATCCTGGCATGCCTGTTGAAATTTCTTCAGAGGCAGAAGAAACTACTAAAGTTGAAAATAATCATAGTCCTACATATCGCTGTAAGAAGTGCCGACGACTTGTTGCATTGCAAGAACATGTCATAGACCATGTTCCTGGTGAGGGTGAGAGAGCCTTTGAGTTCCACAAACGGAGAGGTGGCAACCCTTTCAACAAATCTGATGAATTTGAGTGTTCATCTGTATTTATTGAGCCTCTACGGTGGATGAAAGCTGTTGAGGAAGGTGCAATGGAGGGAAAGCTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGTCAGGCATACAATGCAGCTGCGGAAGCTGGATAACTCCAGCTTTTCAACTCCACAAAAGCTGGATAGATGTGAGTCCCATGTAA 1065 0.4967 MPYTVRENLSIGNIGDAAEILENGAAQSVTHILSVLSSASISFFSEWKTTLSIPAMEITKVHVADAAAKSALPPEKLLYSLEYAGRDLKLVRMAVPLRDTEKDDLLDYLEVCIDFIDRGRKEGSVLVHCFAGVSRSAAIITAYLMRTERLSVEDALESLRQSCEFVCPNDGFLEQLKMFEGMGFKVDHSSPIYKRFRLKILYENHFSGLRIDSSKLGADPGMPVEISSEAEETTKVENNHSPTYRCKKCRRLVALQEHVIDHVPGEGERAFEFHKRRGGNPFNKSDEFECSSVFIEPLRWMKAVEEGAMEGKLSCAHCDARLGYFNWSGIQCSCGSWITPAFQLHKSWIDVSPM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01178 354 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 350 - -
Gma03g01178 354 SMART dsp_5 1 182 IPR020422 GO:0006470|GO:0008138
Gma03g01178 354 Gene3D Protein tyrosine phosphatase superfamily 4 202 IPR029021 -
Gma03g01178 354 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 161 IPR000387 GO:0016311|GO:0016791
Gma03g01178 354 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 185 IPR020422 GO:0006470|GO:0008138
Gma03g01178 354 CDD DSP_DUSP12 5 187 - -
Gma03g01178 354 PIRSF DUSP12 78 354 IPR016278 GO:0006470|GO:0008138
Gma03g01178 354 PIRSF DUSP12 3 74 IPR016278 GO:0006470|GO:0008138
Gma03g01178 354 Pfam Dual specificity phosphatase, catalytic domain 91 180 IPR000340 GO:0008138|GO:0016311
Gma03g01178 354 ProSitePatterns Tyrosine specific protein phosphatases active site. 127 137 IPR016130 GO:0016311|GO:0016791
Gma03g01178 354 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 184 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01178 Gma-Chr3 37435646 37439621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01178 62 180 Protein tyrosine phosphatase (PTP) family AT3G06110 34.711 1.39e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01178 K14819 - gmx:100776877 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01178 03 37435646 37439621 Gma03g01178 03 37435646 37439621 ECH
Gma19g01236 19 41245654 41250176 Gma03g01178 03 37435646 37439621 GST