Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01177 ATGCACCACTTTGCCTTTGCCATGGACAACTCTCACCTCCTCCAATTCCTTCCCAACACCACCACTTCCACCAACAACACCCCCTTCTTCCACCATGCACCACCACACACTCACTCCACCTTCTCTACTAATTCCTCCAATAATACTAGTTCCTACCCCTTCCACCTCTCCCAAATTACCGAAACACCCTCCCACCATGATAGAGCCCTCGCTGCCATGAAGAACCACAAGGAAGCTGAGAAGAGAAGGAGGGAGAGAATCAACTCCCACCTCGACCAGCTTCGCACTCTTCTCCCTTGCAATTCCAAGACAGACAAGGCTTCGCTTTTGGCGAAGGTTGTTCAGCGGGTGAAGGAGTTGAAGCAACAAACATCCGAGATCACCGAGCTCGAAACCGTCCCGTCGGAGACTGACGAGATCACGGTGCTCGCCACCACCGGAGGGGATTACGCCTCCGGTGGTGACGACGGGAGGCTCATCTTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCTGACCTCATCCCGGACCTCATAGAAATCCTCAACTCGCTTCACCTCAAAACCCTCAAAGCCGAAATGGCAACTCTCGGAGGAAGAACTCGCAACGTTCTCATCGTCGCTGCTGACAAAGAACACAGCATTGAATCCATCCACTTCCTTCAGAACTCGCTCAAGTCCCTTCTAGACCGGTCCAGTTCCGGCGACAGGTCGAAACGACGCCGTGGCTTAGACCGAAGACTAATGTCTTAA 750 0.5373 MHHFAFAMDNSHLLQFLPNTTTSTNNTPFFHHAPPHTHSTFSTNSSNNTSSYPFHLSQITETPSHHDRALAAMKNHKEAEKRRRERINSHLDQLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLATTGGDYASGGDDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLIVAADKEHSIESIHFLQNSLKSLLDRSSSGDRSKRRRGLDRRLMS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01177 249 SMART finulus 77 126 IPR011598 GO:0046983
Gma03g01177 249 CDD bHLH_AtAIG1_like 67 142 - -
Gma03g01177 249 PANTHER TRANSCRIPTION FACTOR BHLH30 10 248 IPR045847 GO:0003700|GO:0006355
Gma03g01177 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 131 IPR036638 GO:0046983
Gma03g01177 249 Pfam Helix-loop-helix DNA-binding domain 75 120 IPR011598 GO:0046983
Gma03g01177 249 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 10 248 - -
Gma03g01177 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Gma03g01177 249 Gene3D - 66 132 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01177 Gma-Chr3 37406729 37408410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01177 52 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 69.022 2.64e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g01177 HLH 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01177 - K22484 gmx:100794930 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01177 03 37406729 37408410 Gma03g01177 03 37406729 37408410 ECH
Gma19g01233 19 41191892 41193548 Gma03g01177 03 37406729 37408410 GST
Gma03g01177 03 37406729 37408410 Gma02g01500 02 27127475 27129249 PCT
Gma02g01500 02 27127475 27129249 Gma03g01177 03 37406729 37408410 PCT