Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01173 ATGACCACGCTACCTCATTCATTTACTATGATTGTAACATTAATTATTGTTCTTGCCCAAACACTTGTGGTGGTGAACTCACTTCCTgaagctgataaaataaccaatttgccggggcagccacatgtcaaatttcagcaatattctggttacattaccgtggatgaccaaaatcagagagctttgttttattactttgttgaagcTGAAAAACACCCTACTTCCAAGCCAGTAGTCCTCTGGTTGAATGGAGGTCCTGGTTGTTCATCTATTGGAGTTGGAGCTTTAGTTGAGCATGGCCCTTTCAAACCGGGTGACAACAATGTTCTTGTGAAAAATCATTATAGTTGGAACAAAGTGGCAAATGTGCTATACTTGGAATCACCAGCTGGTGTTGGATTTTCATACTCAAGCAATACATCTTTCTATACCTTAGTGACAGATGAAATTACAGCTAGAGATAATCTTATTTTTCTACAGCGATGGTTCACTGAATTCCCTGAGTACTCAAAAAACGACTTCTTCATTACAGGGGAGAGCTATGCAGGTCACTATGCTCCACAACTTGCACAACTTATTGTTCAAACAAAGACCAACTTCAATCTTAAGGGGGTAGCAATAGGCAATCCTCTAATGGAATTTGATACTGATTTGAACTCCAAAGCTGAATTCTTTTGGTCCCACGGACTGATTTCAGATTCAACTTATGATCTCTTCACCAGAGTTTGCAACTATTCCACAATTAGGAGACAAACGATACAAGGTAATCTTAGTGACGTTTGTGCAAAAATAAATGGACTGGTGTTTACTGAGGTTAGCAACTATATAGACCAATATGATGTCACTCTTGATGTGTGTCTGTCATCAGCAAATCAACAGGCTTATGTGCTGAATCAAATGCAAGAGACACAGAAGATAGATGTTTGTGTGGATGATAAAGCAGTCACAtacttaaacaggaaagatgtgcagaaggctctccatgctaagcttgttgaagtctccaaatggtcagcttgcagcagAGTTCTCCATTATGACCGTCGGAATCTAGAGATACCAACCGTTTCTATTCTAGGCTCACTTGTTAATTCCAACATCAGAGTTCTGGTATACAGTGGAGATCAAGATTCAGTTATCCCATTACTGGGATCTCGGTCTCTGGTGAATGGATTAGCCAAGGAACTTGGACTGAATACAACAGTGGCATATAGAGCCTGGTTTGAGAGAAAACAGGTAGCAGGATGGACACAAGTATACGGAGAGCTCTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTCACTCAACCACAGAGATCACTCGTGCTACTTAAAGCATTTCTAGAAGGAAAGCCACTACCTAATGTTAAATAA 1386 0.3456 MTTLPHSFTMIVTLIIVLAQTLVVVNSLPEADKITNLPGQPHVKFQQYSGYITVDDQNQRALFYYFVEAEKHPTSKPVVLWLNGGPGCSSIGVGALVEHGPFKPGDNNVLVKNHYSWNKVANVLYLESPAGVGFSYSSNTSFYTLVTDEITARDNLIFLQRWFTEFPEYSKNDFFITGESYAGHYAPQLAQLIVQTKTNFNLKGVAIGNPLMEFDTDLNSKAEFFWSHGLISDSTYDLFTRVCNYSTIRRQTIQGNLSDVCAKINGLVFTEVSNYIDQYDVTLDVCLSSANQQAYVLNQMQETQKIDVCVDDKAVTYLNRKDVQKALHAKLVEVSKWSACSRVLHYDRRNLEIPTVSILGSLVNSNIRVLVYSGDQDSVIPLLGSRSLVNGLAKELGLNTTVAYRAWFERKQVAGWTQVYGELLSYATIRGASHEAPFTQPQRSLVLLKAFLEGKPLPNVK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01173 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Gma03g01173 461 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Gma03g01173 461 Gene3D alpha/beta hydrolase 29 288 IPR029058 -
Gma03g01173 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 14 459 IPR001563 GO:0004185|GO:0006508
Gma03g01173 461 SUPERFAMILY alpha/beta-Hydrolases 34 458 IPR029058 -
Gma03g01173 461 Gene3D - 356 454 - -
Gma03g01173 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Gma03g01173 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Gma03g01173 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Gma03g01173 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Gma03g01173 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Gma03g01173 461 Gene3D - 309 345 - -
Gma03g01173 461 PANTHER CARBOXYPEPTIDASE 14 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01173 Gma-Chr3 37332622 37335807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01173 314 457 Calmodulin-binding Proteins AT2G22960 29.252 1.54e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01173 K16297 - gmx:100793889 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01173 03 37332622 37335807 Gma03g01173 03 37332622 37335807 ECH
Gma19g01227 19 41112105 41115295 Gma03g01173 03 37332622 37335807 GST