Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01172 ATGACCATGCTACCTCATTCATTAACTATGATTGCAACACTAATAATCATTTTTCTTGCACAAACACTTGTGGGGGTGAGTTCACTTCCTgaagctgataaaataaccaatttgccggggcagccacgggtcgaatttcagcaatattctggttatgtcaccgtggatgatcaaaatcaaagagctttgttttactactttgttgaggcTGAAGAAAACCCTTCTTCCAAGCCATTAGTCCTATGGTTGAATGGAGGGCCCGGTTGTTCATCGATTGGAGTTGGAGCTTTTGCTGAGCATGGTCCTTTCAGACCAAGTGACAACAATGTTCTTGAGATAAATGATAAAAGTTGGAACAAAGTGGCAAATGTGCTATACTTGGAATCACCAGCTGGTGTTGGATTCTCTTACTCTAGCAATGAATCTTTTTATGCCTTAGTGACAGATGAAATCACAGCTAGGGATAATCTTGTTTTCCTACAGCGTTGGTTCACTAAATTCCCTGAGTACTCAAATAACGACTTCTTCATTTCAGGGGAGAGCTATGGAGGTCACTATGTTCCACAACTTGCACAACTTATTGTTCAAACCAAGACCAACTTCAATCTCAAGGGAATAGCAATAGGGAATCCTCTTCTTGAGTTTAATACTGATTTCAACTCAAGATCTGAGTACCTTTGGTCCCACGGACTGATATCAGATTCAACATACGAAGTCTTAACTAGAGTCTGCAACTTTTCCTCAATTAGGAGACAAATGCAAAATGGGAATCTTAGAGGGGTTTGTGGAAAAGCAAATAAGCTATTGGATAGTGAGATTAGCAACTATGTAGATGAATATGATGTCACTCTTGATGTTTGTTTGTCATCAGTAAATCAACAGGCTTATGTGCTGAATCAACTGCAAGAGACACAGAAGATAGATGTTTGTATCGGTGATAAAACAACTACAtacttgaacactaaagaagtccaagaagctctgcatgctaatcttgttggagtcgccaaatGGTCAACTTGCAGCTCAGTTCTGCATTATGATTATCAGAATCTAGAAATACCAACAATTCCTATTCTAGGGTCACTTGTTAACTCTGGCATCAGGGTCCTAGTGTACAGTGGAGATCAAGATTCAGTGCTTCCATTATTAGGTTCGCGATCTCTAGTTAACGGATTAGCCAAGGAAATTGGACTTGATACAACCGTGGCCTATAGAGCCTGGTTTGAGGGAAAACAGGTGGCAGGATGGACACAAGTATATGGGAACATCTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTTTCTCAACCACAGAGATCACTCGGGCTACTTAAAGCCTTTTTGGAAGGAAAGCCACTACCTGGTGTTAAATAA 1389 0.3521 MTMLPHSLTMIATLIIIFLAQTLVGVSSLPEADKITNLPGQPRVEFQQYSGYVTVDDQNQRALFYYFVEAEENPSSKPLVLWLNGGPGCSSIGVGAFAEHGPFRPSDNNVLEINDKSWNKVANVLYLESPAGVGFSYSSNESFYALVTDEITARDNLVFLQRWFTKFPEYSNNDFFISGESYGGHYVPQLAQLIVQTKTNFNLKGIAIGNPLLEFNTDFNSRSEYLWSHGLISDSTYEVLTRVCNFSSIRRQMQNGNLRGVCGKANKLLDSEISNYVDEYDVTLDVCLSSVNQQAYVLNQLQETQKIDVCIGDKTTTYLNTKEVQEALHANLVGVAKWSTCSSVLHYDYQNLEIPTIPILGSLVNSGIRVLVYSGDQDSVLPLLGSRSLVNGLAKEIGLDTTVAYRAWFEGKQVAGWTQVYGNILSYATIRGASHEAPFSQPQRSLGLLKAFLEGKPLPGVK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01172 462 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Gma03g01172 462 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Gma03g01172 462 PANTHER CARBOXYPEPTIDASE 10 460 - -
Gma03g01172 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 460 IPR001563 GO:0004185|GO:0006508
Gma03g01172 462 Gene3D - 356 455 - -
Gma03g01172 462 Gene3D - 310 346 - -
Gma03g01172 462 Pfam Serine carboxypeptidase 40 455 IPR001563 GO:0004185|GO:0006508
Gma03g01172 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Gma03g01172 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Gma03g01172 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Gma03g01172 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Gma03g01172 462 Gene3D alpha/beta hydrolase 30 289 IPR029058 -
Gma03g01172 462 SUPERFAMILY alpha/beta-Hydrolases 35 459 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01172 Gma-Chr3 37312474 37315248 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01172 318 458 Calmodulin-binding Proteins AT2G22960 34.043 2.47e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01172 K16297 - gmx:100819973 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01172 03 37312474 37315248 Gma03g01172 03 37312474 37315248 ECH
Gma19g01226 19 41099146 41102011 Gma03g01172 03 37312474 37315248 GST