Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01170 ATGTTTCCCCAGCCATGGATCTTCTTGATAGCCACCATCATTGCAATTTCACTGTTCATGTCCTCACTGGTTGAGTCATTTCCAGTAGCTGATAAGGTCAAATCCTTGCCTGAACAGTCACCTGTTTCCTTCCAACAATTCGCTGGCTTTGTACCCGTTGATGACAAGAACCAGAGAGCTCTTTTTTACTACTTTGTTGAAGCAGAAACCAACCCTGCTTCAAAGCCTCTAGTTCTCTGGCTCAATGGAGGGCCTGGTTGTACATCTGTTGGAGTTGGAGCCTTCACAGAACATGGTCCTTTTGTTACAAATCAAGGAGAAGCTATTGAGAAAAATCAGTATAGTTGGAACAAAGAGGCAAACATTTTGTACCTAGAGTCACCAGCAGGCGTTGGATTCTCTTACTCTCTCAATTTGTCATTTTATAAAACACTGAACGATGAAATCACAGCCCGAGACAGTCTGGTTTTCCTGCGGCGCTGGTTTGCCAAGTTCCCAGAATACAAGAATAGAGATTTTTATATAACGGGAGAGAGTTATGGAGGTCACTATGTACCTCAACTTGCTGAACTCATAATTAAGAGTAAAGTGAATTTCAACCTAAAGGGCATAGCAATAGGAAACCCTCTTCTGGATTTCGACACTGATATGAATGCAGTCGATGAATATTACTGGTCTCATGGAATAATAAGTGATTATGCATACAAAATCAGGACCTCTCTATGTAACTCGTCTAGAGTATTAAGAGAATACTTCAGTGGCCAAATTTCCAAAGATTGTCTTGTTGCAGCTCAAAAAGTCTCAGAAGAATATTCTTTTACAAATTTCATCGACCCATATTACGTTGTTGGGGAGAAATGTCTTTCTTACAATGTTTCTCAGGCAGGTTTTCTTAGGGAGACGCTAAATTCAGGGATGTTTCAGTTTAGGAACTCTCATTATGTGCTTCAAACAGAAGAACCTGACCAGcaagttgatgagtgtaatttgaaatattcagagatgtacttgaacaggaaagatgtgcagaaggctctccatgcccggctggagggaaccaccaaatatcgtttgtgcagcaagattgtacaaacaaattatgacccattgaacagagagataccaacaattaatgttgtcggcttccttgtaaaatcaggtcttcgagtcatcgtatacagtggggatcaagactctgtgattccattcatgggcacgagaagattggttgatagactagcaaagacactaggacttaaaacaaccctgccttacagtgcctggtttgtGGACAAGCAGGTTGGAGGATGGACACAAGTTTATGGCAATCACCTCACGTACACCACAATAAGAGGAGCTTCACATGGCACTCCAGCTACTCAACCAAAGAGATCTTTTGTTTTGTTTAATGCGTTTCTTCAAGGGAAACCACTCCCTAAAGCATGA 1446 0.3209 MFPQPWIFLIATIIAISLFMSSLVESFPVADKVKSLPEQSPVSFQQFAGFVPVDDKNQRALFYYFVEAETNPASKPLVLWLNGGPGCTSVGVGAFTEHGPFVTNQGEAIEKNQYSWNKEANILYLESPAGVGFSYSLNLSFYKTLNDEITARDSLVFLRRWFAKFPEYKNRDFYITGESYGGHYVPQLAELIIKSKVNFNLKGIAIGNPLLDFDTDMNAVDEYYWSHGIISDYAYKIRTSLCNSSRVLREYFSGQISKDCLVAAQKVSEEYSFTNFIDPYYVVGEKCLSYNVSQAGFLRETLNSGMFQFRNSHYVLQTEEPDQQVDECNLKYSEMYLNRKDVQKALHARLEGTTKYRLCSKIVQTNYDPLNREIPTINVVGFLVKSGLRVIVYSGDQDSVIPFMGTRRLVDRLAKTLGLKTTLPYSAWFVDKQVGGWTQVYGNHLTYTTIRGASHGTPATQPKRSFVLFNAFLQGKPLPKA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01170 481 Pfam Serine carboxypeptidase 39 475 IPR001563 GO:0004185|GO:0006508
Gma03g01170 481 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Gma03g01170 481 SUPERFAMILY alpha/beta-Hydrolases 34 479 IPR029058 -
Gma03g01170 481 PANTHER CARBOXYPEPTIDASE 3 480 - -
Gma03g01170 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Gma03g01170 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Gma03g01170 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Gma03g01170 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Gma03g01170 481 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 3 480 IPR001563 GO:0004185|GO:0006508
Gma03g01170 481 Gene3D alpha/beta hydrolase 24 479 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01170 Gma-Chr3 37286925 37290459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01170 333 478 Calmodulin-binding Proteins AT2G22960 28.477 3.84e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01170 K16297 - gmx:100819443 970.304