Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01168 ATGGATTGGCAAGAAGATGATCGTAGTTTCGAGTCTTCAGAATCGTCAGACAAATACCTGTTGGGCTTCATCATGTCCAACATCGTGGGCCTGCAGCACCACTCCGGCACCCTCCACGGCGAGCGTCCTCTGGTGGGCCTGGCCCGCGAGCCCCACAACCCGCACGACCCTCACGCCATCGTAGTCCTCAACACCCACAGCCTCTCCGTCGGCTACATCGAACGCTCCGTCGCCGCCGCCCTCTCCCCCCTCATCGACCAAAACCTCGTCAAAGTCGAAGCCATCGTCCCCACCGCCCGCAATGCCCACCGCATCCCCTGCCAGATTCACGTCTTCGCCCGCGTTTCCGACTTCAGCGCCGTCGAAAACGCCGTCGAGGACGCCGGGCTCAAGATCATCACCGGGTCCGACGCCTCCTTCACCCTCTCCGACTCCGTCGCCGTCAAGGAGACCCGCGCGCAGAAGAAGTCGTCCTCCGTCGACGCCATTTTCAAGAAAGTCAACCGAAGCTACACCGGCAAGAACCCTGCTATCCAAATCCTGGAGCCTCCGAGGACCATCATCAGAACAGAGCTTCTCCAGCACCAGAAGGAGGGTCTCGCATGGCTCGTCCATCGCGAAAATTCCGATGATCTCCCCCCGTTCTGGGAAGAAAATGAAGGCAAATTCGTGAATATCTTGACAGATTATCAATCGGATAACCGGCCTGACCCTTTACGAGGTGGTATCTTCGCCGACGAAATGGGGTTGGGAAAGACCCTAACTTTGCTTTCTTTGATTGCTTTTGATAAAAAGAGCCAAATGGGTGTCTCGAAGAAGTGGAGAACTGACAGAAAGGTTGTTACTTTGGAGAAAAGAAGAATGCGTGAAAGTGAGAATGAAAGTGAGAGCAGTTCCCCTGAGAAGGGATTTAGAACAAATGCAACCTTGGTGGTGTGTCCTCCTTCTGTTATGTCGACGTGGATCACACAATTGGAGGAACACACTGTGCCTGGTGCATTGAAGACTTACATGTATTATGGAGAAAGGAGGACGGATGATCCTTTTGATCTCAATAGGTATGATCTGGTGTTGACCACATATGGTATTTTGGCTGGCGAACACTGTATGCCCAAGATGCCGGCTAAGAATATGTATTGGCGGAGAATTGTGCTGGATGAGGCACACACCATCAAGAATTTCAATGCTCTGCAGAGTTTGGCGGTTAGCAAGTTGAATGCTCAGTGCAGATGGGCTGTCACAGGGACGCCAATTCAGAGTGGTTGCATTGATTTGTTTTCTATAATGGTCTTTTTGCGGTTTCAACCCTTTTCAGTGAGACAACAATGGAGAGAGTTGGTGCAACGATCTCTTAATAAGGGCAAAGACAAAGGGCTCGTACGTTTGCAGATTTTGATGGAGGCAATTGCTTTGCGAAGAACAAAAGATATGACATTGGTGGGGCTGCCACCCAAAACCATTGAGATTTGTTATGTCGAGCTTTCTTTTGATGAACGTCAAATGTATGATCAGTTGAAACAGGATACAAAGATATTTTTGAGTAGGTATGCCCATGATGACAGTCTAGTGCCCCATTATTCTGCTGTACTAAGTAGGATTCTAAGACTTCGCCAAATCTGTACTGATTCAAAACTGTGGAATGTTCAGTCGCTACTCCTTACAAATATTGAAGATGCCTCCAATAATCCTGAACTGCTGCAAGCATTACTTGGGCAGGTGCAAGATGGTGAAGATTTTGACTGTCCAATTTGTTTGTCTCCCCCGATAGAGATTGTGATCACACGTTGTGCTCACATCTTCTGCCGAATCTGTATTCTGAGAGCTCTACAAAATAAAAACCCATGTTGTCCTCTTTGCCGGCGCCGCCTCAAAGAATCTGACTTGTTCTCAGCCCCTCCCGAGTCTTCCAAGGTAGATAGTGCTGGAGAGTGCTCATCATCACAAACAGTGTTACCCTCCAAAGTGTCTACATTGATAAAACTTCTTACAGAATCGAGGGACCAACATCCAGCTGCAAAGTCTGTTGTATTTTCACAATTTCGAAAGCTGCTATTGTTAATGGAAGAGCCTTTGAATGCAGCTGGATTCAAGACCCTGCGTCTTGATGGGACAATGAATGCTAAACACAGGGCCAATGTTATTGAGCAGTTTCAATCCCAAGGAATAGATGGGCCAACAGTTCTGCTTGCAAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTGACATCTGCCTCTAGACTGTACTTCATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCGATGGATCGTGTCCACCGCATTGGTCAGAAAGAGGCTGTGAAGATTGTTCGATTGATTGCTCAAAACAGCATTGAAGAACAAATATTGGTGTTACAGGAGAAGAAGAAACAACTGCCTAGGGAACCATCTGGGACAGGATTAAAGGGCATGGGCATAAATGATATACATTTCCTTTTAGATCACTAG 2472 0.4818 MDWQEDDRSFESSESSDKYLLGFIMSNIVGLQHHSGTLHGERPLVGLAREPHNPHDPHAIVVLNTHSLSVGYIERSVAAALSPLIDQNLVKVEAIVPTARNAHRIPCQIHVFARVSDFSAVENAVEDAGLKIITGSDASFTLSDSVAVKETRAQKKSSSVDAIFKKVNRSYTGKNPAIQILEPPRTIIRTELLQHQKEGLAWLVHRENSDDLPPFWEENEGKFVNILTDYQSDNRPDPLRGGIFADEMGLGKTLTLLSLIAFDKKSQMGVSKKWRTDRKVVTLEKRRMRESENESESSSPEKGFRTNATLVVCPPSVMSTWITQLEEHTVPGALKTYMYYGERRTDDPFDLNRYDLVLTTYGILAGEHCMPKMPAKNMYWRRIVLDEAHTIKNFNALQSLAVSKLNAQCRWAVTGTPIQSGCIDLFSIMVFLRFQPFSVRQQWRELVQRSLNKGKDKGLVRLQILMEAIALRRTKDMTLVGLPPKTIEICYVELSFDERQMYDQLKQDTKIFLSRYAHDDSLVPHYSAVLSRILRLRQICTDSKLWNVQSLLLTNIEDASNNPELLQALLGQVQDGEDFDCPICLSPPIEIVITRCAHIFCRICILRALQNKNPCCPLCRRRLKESDLFSAPPESSKVDSAGECSSSQTVLPSKVSTLIKLLTESRDQHPAAKSVVFSQFRKLLLLMEEPLNAAGFKTLRLDGTMNAKHRANVIEQFQSQGIDGPTVLLASLRASSAGINLTSASRLYFMEPWWNHAVEEQAMDRVHRIGQKEAVKIVRLIAQNSIEEQILVLQEKKKQLPREPSGTGLKGMGINDIHFLLDH 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01168 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 473 IPR027417 -
Gma03g01168 823 Pfam Zinc finger, C3HC4 type (RING finger) 578 624 - -
Gma03g01168 823 SMART ultradead3 188 442 IPR014001 -
Gma03g01168 823 SMART helicmild6 685 770 IPR001650 -
Gma03g01168 823 Pfam Helicase conserved C-terminal domain 654 770 IPR001650 -
Gma03g01168 823 SUPERFAMILY RING/U-box 565 626 - -
Gma03g01168 823 ProSitePatterns Zinc finger RING-type signature. 596 605 IPR017907 -
Gma03g01168 823 CDD SF2_C_SNF 649 781 - -
Gma03g01168 823 Gene3D - 483 808 IPR027417 -
Gma03g01168 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 657 813 IPR001650 -
Gma03g01168 823 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 285 807 - -
Gma03g01168 823 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 5 264 - -
Gma03g01168 823 Pfam SNF2-related domain 195 544 IPR000330 GO:0005524|GO:0140658
Gma03g01168 823 Gene3D - 229 474 IPR038718 -
Gma03g01168 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 809 IPR027417 -
Gma03g01168 823 CDD RING-HC_HLTF 580 620 - -
Gma03g01168 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 636 IPR013083 -
Gma03g01168 823 SMART HIRAN_2 21 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gma03g01168 823 Pfam HIRAN domain 22 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gma03g01168 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 435 IPR014001 -
Gma03g01168 823 Gene3D - 12 132 - -
Gma03g01168 823 ProSiteProfiles Zinc finger RING-type profile. 581 620 IPR001841 -
Gma03g01168 823 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 285 807 - -
Gma03g01168 823 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 5 264 - -
Gma03g01168 823 SMART ring_2 581 619 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01168 Gma-Chr3 37231452 37235833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01168 16 803 RAD5 or RAD16-like Gene Family AT5G05130 55.734 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma03g01168 SNF2_N 1.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01168 K15711 - gmx:100791783 1617.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01168 03 37231452 37235833 Gma03g01168 03 37231452 37235833 ECH