Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01160 ATGCCTTCTTCGAGTTCGAATTCAAAGCAGAAAAAGAAGCAATCCAAAGTTTTGCAGAAGCACTCATCATTGTCATCCAATGGCACTACCTCGCCTTCCAAAACGCTCCAACCTTCCGAACTCACCTCTTTCTGCGAAGAAGCTTCTCGAAAGTTCTCTTCTCTCATCGCTAAATCCGCCTTCGTCGCCGAACTCACCCACGTCGACGACACCGTCCCCGTTTCTAACAGAATCTGGCTCTCCGCACCTTCCATGCTCTCCCTCTCTTTCTCCCCCGCTTCCACTGTCTCGGTGTCTATTCCATCTTCCGGGGAGAAAAGTTCGCAATTGCATAGCTTTCCCCTTGCTTCGTTAGCTGATGAATGTGAAAAATTCTATGAATTGGAAAGTAGCAAGGCCTTCGATGATTATGCGGGAAACTACTTTGTGCTTGCAACAGTGTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTATTATGCCATGGGGTGTCCTCCTTTGGGCACAAGTGTGTTTGTTCATCCAATACAGAAAAGTCTTGCAAATGGGAGCAATGAACAACATTCTACAGAAAATAATTGTCTGCCTATATATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAGAATGGGCTGCCATTGAAATTTAATAACTTTCCCTCATCGGGCATGTCTAAGGTGAAATCCCATGTCCAATCTGAGAATGATATCATTGCATCTCCTGCAACGCCTTCGAATGGATCAAAGTTTTCTAATGCTATTGGGATGTCTTCTCCACTATTTGATGATTCAGCGTCTAGTGTGCCAAATCTGAATAGTCAATCGTTGAATTCATTTGATGTTAGCTTAGCATTACGGGATGAAAGTTCTAAAGAAATACTACTGACGGGTGCAAAACCATGGTTATATTCTCGCTCTTTACTTCTAGGGAATCTTGTCAATGTCCCAATGCTATCAGAGTTGTGCTTTTTCCAAGTGATAGGAGCTAAGAAGCAGCCAGTTACCAAATCTGATCATTGTCCATCAAATGGAAACAGTGATTTATATCCTGAGGATTCTGATATAGCAGAGAGTGTAAATCAGGCTTTCACTGTTAACGATGAAACAAAGGTGTTTTTATCTCTGCCATCAAATGCAGCATCCGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAACACAAAGTTGCTAATGCTAGTTTACATGATAAAATCTCTAAATTGGGTGGTCTATCCAAAGAATATACACTTCTAAAAGATATAATTTCTTCATCTGTGAGCGATGCTTTATCAAGTTTTGGTTTAAGAACCACAAGAGGTGTCCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGATGTTGGGGTCAAATTTTTCCCAATAAATGGACCTGAGATTGTTACCCAATATTATGGGGAAAGTGAGCAACAATTGCATGAACTTTTTGATTCAGCCATTCAAGCTGCACCTGCCGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTAAATCTGGTGGATGGAATTAGTAGAAGTGAAGGGTTACTTGTAATTGCTGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGACGACCGGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCACCCAACCAACGTTCGGATATTTTGCTCACTCTTCTCAGTGAAATGGATCACTCTCTCGCGGAGTTGCAAATTGAAAACCTTGCCACCGTCACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAGGCAGCCTTGATTTGCCTACGGCGTTATGCTAATTTTAAGAAGACTTATGATTCTTGTTCTGATTATATAACAGAGCAACCTGCTCTGATGAATGGTGCAACAAACTCAATAGATCATTCAGGTGATGCAACTTCATCTGTTTCAGATATGTCAGTGGCCTCCAGTCGTGTATTACCTTCCTGCATGATTGGAATGACTTCTGAAGCTATGGAAATAATTCCTGATAGTGGCGAAGAAGAGCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAGAAGGCTAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGTGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCGGTTGAATGGCCACAAAAACACCATGATGCATTCAATCGTATTGGGACTCGCCCTCCTACCGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAAACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGCTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCATTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGATAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTATCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTGCATCAAAGAGTTAATGTCACCGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATACATCTGCGTAAAATCCCGTGTGGTTCTGATGTTAGCCTTAAAGAACTAGCTCGACTCACAGATGGTTGTACAGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGGAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGAAGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGAGCCGTCCGCTGCTGTGATATAAAGGATGAATTCAATGATATGCCGTGCGACAGTAGATCTACTCAGTTCAGCATTTGGAAGTTCATAAAATCTTACACATTGTAA 3111 0.4246 MPSSSSNSKQKKKQSKVLQKHSSLSSNGTTSPSKTLQPSELTSFCEEASRKFSSLIAKSAFVAELTHVDDTVPVSNRIWLSAPSMLSLSFSPASTVSVSIPSSGEKSSQLHSFPLASLADECEKFYELESSKAFDDYAGNYFVLATVFPSSKVLKNGVRLSSNLYYAMGCPPLGTSVFVHPIQKSLANGSNEQHSTENNCLPIYNCKELYLQLVPSKNGLPLKFNNFPSSGMSKVKSHVQSENDIIASPATPSNGSKFSNAIGMSSPLFDDSASSVPNLNSQSLNSFDVSLALRDESSKEILLTGAKPWLYSRSLLLGNLVNVPMLSELCFFQVIGAKKQPVTKSDHCPSNGNSDLYPEDSDIAESVNQAFTVNDETKVFLSLPSNAASEEPIQRDIPCVKLEHKVANASLHDKISKLGGLSKEYTLLKDIISSSVSDALSSFGLRTTRGVLLHGPPGTGKTSLAQLCAHDVGVKFFPINGPEIVTQYYGESEQQLHELFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLVDGISRSEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPNQRSDILLTLLSEMDHSLAELQIENLATVTHGFVGADLAALCNEAALICLRRYANFKKTYDSCSDYITEQPALMNGATNSIDHSGDATSSVSDMSVASSRVLPSCMIGMTSEAMEIIPDSGEEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFNRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSLKELARLTDGCTGADISLICREAAVAAIEESLDASVITMEHLKMAIKQIQPSEVHSYQKLSTKFQRAVRCCDIKDEFNDMPCDSRSTQFSIWKFIKSYTL 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01160 1036 Gene3D - 741 988 IPR027417 -
Gma03g01160 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 990 IPR027417 -
Gma03g01160 1036 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 639 IPR027417 -
Gma03g01160 1036 Pfam ATPase family associated with various cellular activities (AAA) 451 580 IPR003959 GO:0005524|GO:0016887
Gma03g01160 1036 Pfam ATPase family associated with various cellular activities (AAA) 780 911 IPR003959 GO:0005524|GO:0016887
Gma03g01160 1036 MobiDBLite consensus disorder prediction 19 39 - -
Gma03g01160 1036 SMART AAA_5 447 583 IPR003593 -
Gma03g01160 1036 SMART AAA_5 776 914 IPR003593 -
Gma03g01160 1036 CDD AAA 445 580 - -
Gma03g01160 1036 Gene3D - 401 582 IPR027417 -
Gma03g01160 1036 CDD AAA 746 912 - -
Gma03g01160 1036 Pfam AAA+ lid domain 606 637 IPR041569 -
Gma03g01160 1036 Pfam AAA+ lid domain 934 979 IPR041569 -
Gma03g01160 1036 Gene3D - 913 983 - -
Gma03g01160 1036 PANTHER - 76 1010 - -
Gma03g01160 1036 Gene3D - 583 740 - -
Gma03g01160 1036 PANTHER AAA-FAMILY ATPASE 76 1010 - -
Gma03g01160 1036 MobiDBLite consensus disorder prediction 1 39 - -
Gma03g01160 1036 ProSitePatterns AAA-protein family signature. 882 900 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01160 Gma-Chr3 37053490 37060737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01160 11 1036 Calmodulin-binding Proteins AT3G56690 54.863 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01160 - - gmx:100788600 1995.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01160 03 37053490 37060737 Gma03g01160 03 37053490 37060737 ECH
Gma19g01217 19 40939843 40945580 Gma03g01160 03 37053490 37060737 GST