Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01159 ATGAGGGAAGAGGATTCCAATTGGTTTTCGCGATGGGAAGAGGAGTTTCCGTCTCCAGAAGAACTCATGCCTCTATCGCAAACCCTAATTACTCCCGATCTAGCCATGGCCTTCGACATCCGAAACCCTCACACCACCAACACCGCTCAGCAACAACACCACCAACACCAACAACAACCGCAACAACAACAACAACCTTCGAACCCTTCCTCGCTCCCCAACCCGCTACAGCAACAACAACAACAACAACAACCTACCTCCGCCGAGTTCGCCGACTCCGGCGAACTCGGCTCTGGCACCGCCGGCGAGGAGCCGGCGCGTACCCTAAAACGGCCCCGCCTCGTGTGGACCCCACAGCTCCACAAGCGCTTCGTTGACGCCGTCGCGCACCTCGGCATCAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCCGCGAAAACGTCGCTAGTCACTTGCAGAAGTACCGTCTCTACCTGAAACGCATGCAGGGGATTTCCGCCGCCGGACCCGGTGGTCCAGGCGGCGGCGCCTCCGGCGCCGTGGCCGACCCCGCCACCGACCACTTGTTCGCCAGCTCCCCGGTTCCGGCGCATTTCTTGCACCCGGCCGCGAGGCCGAATTCGGATCACTTCCTGCCGTTCGTGCCGGCGCTCCACCCCCATCAGCAGCAGCAGCAGATGGCGGCGGCGGCGCAGTACCACCGGCAGGTGGGGCATTTCGGGTCCCCGCCGAACGGGCACTTCGAGAACCCGTTCATGTCTAGGCCGAATCTTCAGAGAATGGGAGGTGGTGGTGGTGGAGGTCCTGTGCACAACAACCACCACCCTGTGAGTGGTTATGTGGAGGACATGGAGTCTGCTAATGCTGCCTCTGGAGGTGGTAATAAACGTGGGTTACAGTTGGTAGAAACTAATGGAGGCGTATCTGATTGGCATGGTTGGTTGTGA 969 0.5955 MREEDSNWFSRWEEEFPSPEELMPLSQTLITPDLAMAFDIRNPHTTNTAQQQHHQHQQQPQQQQQPSNPSSLPNPLQQQQQQQQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASGAVADPATDHLFASSPVPAHFLHPAARPNSDHFLPFVPALHPHQQQQQMAAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRMGGGGGGGPVHNNHHPVSGYVEDMESANAASGGGNKRGLQLVETNGGVSDWHGWL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01159 322 MobiDBLite consensus disorder prediction 1 110 - -
Gma03g01159 322 Gene3D - 108 170 - -
Gma03g01159 322 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
Gma03g01159 322 SUPERFAMILY beta-sandwich domain of Sec23/24 42 88 - -
Gma03g01159 322 MobiDBLite consensus disorder prediction 41 93 - -
Gma03g01159 322 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 296 IPR044841 GO:0003700|GO:0006355
Gma03g01159 322 MobiDBLite consensus disorder prediction 250 285 - -
Gma03g01159 322 SUPERFAMILY Homeodomain-like 108 168 IPR009057 -
Gma03g01159 322 Pfam Myb-like DNA-binding domain 115 163 IPR001005 -
Gma03g01159 322 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 296 - -
Gma03g01159 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 167 IPR017930 -
Gma03g01159 322 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01159 Gma-Chr3 37047989 37049568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01159 1 299 G2-like Transcription Factor Family AT3G10760 54.467 3.98e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma03g01159 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01159 - - gmx:100815363 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01159 03 37047989 37049568 Gma03g01159 03 37047989 37049568 ECH
Gma19g01216 19 40932975 40936108 Gma03g01159 03 37047989 37049568 GST