Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma03g01108 | ATGGAATTTGGAGAGAACAACATGTTCAGCCTTAACACCCACACAAAAGAGGAAAATGGAAACACTGGCGGTAACAGTAACAATAACAATATTGTTAATGTTTGGTATTCATCATGGGATGCTACTACTACAACTAATGCACCACACACCACCACGGCCGCGGAGGGCTACGCCGGCGGCGGTCACCGCCTCCATCACCACCAACTATACGGCGGCGAAGGGTGTCACGTGCAGGCGGACCCTCACCTCACGTGCTTGCATCTTGGTAAAAGACATTACTTTGAGGATGCTACTAACGGTGATGATGCTAACAATGTTACTTCTCTGGGGAACCGACACGTGTGCGGTGGTGGTGGTGCGGGTTTTGTTTTTGCGGGTAACGATAAGAGAGCGAGGGGGTATTATGGTGGAGGAGGAGGTGGGGCTGGCGGTGGTGGTGGTGGTGGGAAATCGGCGCCGTTTGCGATGGTTCCTCGATGTCAGGTAGAGGGGTGCCACGTGGCGCTTGTGAACGCGAAGGAGTACCACAGGAGGCACAGAGTTTGCGATAAGCATTCCAAGGCACCCAAAGCTGTGGTCTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTTCATGTGGTGTCAGAGTTTGATGACTCAAAGAGGAGTTGTAGGAGGAGATTGGCAGGTCATAACGAGCGAAGAAGAAAGAGCTCTCACCTTTCTGTTACTAGGAATTCTAGACAAGGGTGTGCTCTCTCTCTTCTGTCATCTGGGAGTAGTAGTGAAAATTGGCTATCTCATCATGCGGATTTCTCCACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAACCGTGCTGCCCTAATCACTAGACAACAACAACTTGTTTATGATAGAGACTGGCCTCATGTTGTGCCCCACCATGATGCTGCAGTGGAAGAAGAAGAAGAAGACTTTGAAGACTTACAACAACAACAACAACCACCTGAGCCCAATTATTTTCCACAACAACATATGTTTCCACAGACATAA | 1029 | 0.4917 | MEFGENNMFSLNTHTKEENGNTGGNSNNNNIVNVWYSSWDATTTTNAPHTTTAAEGYAGGGHRLHHHQLYGGEGCHVQADPHLTCLHLGKRHYFEDATNGDDANNVTSLGNRHVCGGGGAGFVFAGNDKRARGYYGGGGGGAGGGGGGGKSAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDKHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCALSLLSSGSSSENWLSHHADFSTRCSAALRELIAENRAALITRQQQLVYDRDWPHVVPHHDAAVEEEEEDFEDLQQQQQPPEPNYFPQQHMFPQT | 342 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma03g01108 | 342 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 | 25 | 335 | - | - | |
Gma03g01108 | 342 | ProSiteProfiles | Zinc finger SBP-type profile. | 157 | 234 | IPR004333 | GO:0003677 | |
Gma03g01108 | 342 | MobiDBLite | consensus disorder prediction | 311 | 342 | - | - | |
Gma03g01108 | 342 | Pfam | SBP domain | 160 | 233 | IPR004333 | GO:0003677 | |
Gma03g01108 | 342 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 25 | 335 | IPR044817 | GO:0003677 | |
Gma03g01108 | 342 | MobiDBLite | consensus disorder prediction | 323 | 342 | - | - | |
Gma03g01108 | 342 | SUPERFAMILY | SBT domain | 158 | 236 | IPR036893 | GO:0003677|GO:0005634 | |
Gma03g01108 | 342 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Gma03g01108 | 342 | Gene3D | - | 152 | 221 | IPR036893 | GO:0003677|GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma03g01108 | Gma-Chr3 | 36119199 | 36122453 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma03g01108 | 85 | 233 | SBP-box Gene Family | AT1G27360 | 47.651 | 1.13e-35 | 132 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Gma03g01108 | SBP | 3.3e-30 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma03g01108 | - | - | gmx:100816072 | 572.007 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma03g01108 | 03 | 36119199 | 36122453 | Gma07g00994 | 07 | 11244891 | 11248332 | GST | |
Gma03g01108 | 03 | 36119199 | 36122453 | Gma07g01426 | 07 | 19299270 | 19300109 | PCT |