Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01107 ATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCTCTCCGGAAACGAAGACAGCTCCGCCGCGGGCTCCGACCAAACCCACCGTCAAATCTTCGACCACTATGCGTCCCACACACTCATCCCCGACCACTTCCTACACGCGCCAACGCACTCCACCGCCACCACCGCCGCCGCAGCCACCGTGGATTTCACCCATCACCACCACTTCACCCCGCAACCCCACCACCACAACCAAAACCACATGAACCACCACCACCACCATGCCTTCTTCGACCCACGCGCTTTTCATGGCGCGTCGAACACCTCTTACCCCCCACCCCATTCCATGCTCTCCCTTGACCCGCTACCTCACGTCAACGCAGTTGGGCCTGGGCACGGGCCCGGTTCCGGGCCAGGCGGACTTCTCCTTGTCCCAAAGTCTGAAGACGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGACTCAACCTCGGAGGACGGACTTACTTCTCATCCTCCGAGGATGACTTCGTGAGCCGGCTCTACCGTCGGTCTAGGCCCGTGGAACCGGGTTCGACTGCCTCGTCGAACTCGCCGCGGTGTCAGGCCGAGGGATGCAATGCTGATCTGTCGCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACACAGCAACCAACTCAAGAAATTCAGAAATCTCAGTCTTCTTTGGAGAATGTTGCAAGATCTCCACCGGACTCCGGAGCTCAGTCTTCCTCGTCGGTGACTGTGGCAGTGTCGCCGCCAGACTATTTCCGGCAGAGGCCATACCAAAGCACGAACCCTTCATCTACTACTTCAAGCTCATTGTTTTTCTCAAGCGGGTAG 1011 0.5757 MLDYEWGNPSTIMLSGNEDSSAAGSDQTHRQIFDHYASHTLIPDHFLHAPTHSTATTAAAATVDFTHHHHFTPQPHHHNQNHMNHHHHHAFFDPRAFHGASNTSYPPPHSMLSLDPLPHVNAVGPGHGPGSGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPVEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQEIQKSQSSLENVARSPPDSGAQSSSSVTVAVSPPDYFRQRPYQSTNPSSTTSSSLFFSSG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01107 336 ProSiteProfiles Zinc finger SBP-type profile. 194 271 IPR004333 GO:0003677
Gma03g01107 336 Pfam SBP domain 197 270 IPR004333 GO:0003677
Gma03g01107 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 84 320 IPR044817 GO:0003677
Gma03g01107 336 SUPERFAMILY SBT domain 195 275 IPR036893 GO:0003677|GO:0005634
Gma03g01107 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 84 320 - -
Gma03g01107 336 MobiDBLite consensus disorder prediction 263 336 - -
Gma03g01107 336 MobiDBLite consensus disorder prediction 275 336 - -
Gma03g01107 336 Gene3D - 187 258 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01107 Gma-Chr3 36057039 36059369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01107 1 244 SBP-box Gene Family AT1G02065 44.402 2.66e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma03g01107 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01107 - - gmx:100802206 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01107 03 36057039 36059369 Gma03g01107 03 36057039 36059369 ECH
Gma03g01107 03 36057039 36059369 Gma07g00996 07 11372760 11374969 GST