Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01088 ATGCACGGGAAAAAGGAGCAAGAAGAGTACATAAGGAAAGGGCAATGGGAAGCAGAAGAAGATGAGGTGCTACTGAACCACGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGGACTGGCAAGTCGTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTTGAGGAAGAGAGGGTTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCGAAGATTGCATCCTATTTGCCAGGGAGAACAGACAACGATGTCAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAAACATCAGCAACAACTTTCAGATCACAGAAAAATAAAACTAAAGTTCCTTCCTTTCTTGATGTTCCAACTTTGGAGGCTCCTAAGTTCAGTTCATCGTCAGAGGGAGAACCATCATCAAAGCCTCAGACATGCACACTACCCTACATTGATAATTCTGAGGTTATCCAAATGGTGTCTTTGCCAGATCTCATAAAGTCTGAGTTGCCTAGTTCCGACACAATCCATGTTGAACAAGAGTTTACCCTTTTTGAGAACTACAAAAGCACTGAACAGATTGCATTTCCTCAGATCCCAGAACTCCAAAATGGCCTCACATTCTCAATGGAAAACCAAGATCTCGTGCCCACAATTGAAGAGCCATGTTTCATTGAAGACTTGTGTCCCTTTGATGTATCTGAGTTTGGAATAGGTCCACAACACCCCTTTGGTTTTCCTTTCTTCGAGCCACCAGGAAGTTGCAGATTTGGGACAAGGGATGCAATTGATAACTTCAAAATCAGTGACAGCTTCTTCGATGATTTACCTGTGGACATGTTTGATCACATGGACCCACCTGCAAGCCCTTCAAACCTCTGA 936 0.4402 MHGKKEQEEYIRKGQWEAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNRWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSATTFRSQKNKTKVPSFLDVPTLEAPKFSSSSEGEPSSKPQTCTLPYIDNSEVIQMVSLPDLIKSELPSSDTIHVEQEFTLFENYKSTEQIAFPQIPELQNGLTFSMENQDLVPTIEEPCFIEDLCPFDVSEFGIGPQHPFGFPFFEPPGSCRFGTRDAIDNFKISDSFFDDLPVDMFDHMDPPASPSNL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01088 311 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Gma03g01088 311 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma03g01088 311 Gene3D - 13 65 - -
Gma03g01088 311 CDD SANT 69 108 IPR001005 -
Gma03g01088 311 CDD SANT 16 60 IPR001005 -
Gma03g01088 311 SMART sant 66 114 IPR001005 -
Gma03g01088 311 SMART sant 12 62 IPR001005 -
Gma03g01088 311 Gene3D - 68 137 - -
Gma03g01088 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 56 IPR017930 -
Gma03g01088 311 PANTHER TRANSCRIPTION FACTOR DUO1 1 310 - -
Gma03g01088 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 116 IPR017930 -
Gma03g01088 311 PANTHER TRANSCRIPTION FACTOR DUO1 1 310 - -
Gma03g01088 311 Pfam Myb-like DNA-binding domain 16 75 - -
Gma03g01088 311 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01088 Gma-Chr3 35699836 35701902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01088 1 308 MYB Transcription Factor Family AT3G60460 48.125 2.39e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g01088 Myb_DNA-bind_6 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01088 K09422 - gmx:100805384 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01088 03 35699836 35701902 Gma03g01088 03 35699836 35701902 ECH
Gma03g01088 03 35699836 35701902 Gma07g01006 07 11668020 11670033 GST