Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01077 ATGAGTGAGAAAGATGATGGCTTGGGTTTGGGGTTGAGTTTGAAGTTGGGATGGGGAGAAAATGATGATGATAATAATAATAATCTAAATCATCATCAACAACAACAATACCCTTTCTACGTGCACAAGCCTCCTCAATCGGTTCCAAACCAAAGGGCTTCCTTCAATAACTTGTTCCATTTTCATGATCGGAGCTCCGAGACGCGGTCGTTCCTCCGCGGAATAGACGTGAATCTGCCACCTCCGCCCCCATCGGCGGTGGTCGACGACGAGAACGCGGTGTCATCGCCGAACAGCACGATATCGAGCATCAGCGGGAAGCGGAGCGAGAGAGAGGGCAACGGAGACGAAAACGAGAGAACATCGAGTTCTCGCGGCGGCGGAAGCGACGACGATGATGGCGGAGCTTGCGGCGGAGACGGCGACGGCGAAGCGTCGAGGAAGAAGCTGAGGTTGTCCAAGGAACAGGCATTGGTGCTGGAAGAAACATTCAAGGAACACAACAGTCTGAACCCGAAGCAAAAGCAAGCTTTGGCAAAGCAGTTGAATTTGATGCCTAGGCAGGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTGAAGAACTGCTGTGAGAATCTAACTGAAGAGAATAGGAGGCTTCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCCCCACAGCTTTACATGAACATGAACCCTCCCACCACTCTCACAATGTGCCCTTCGTGCGAGCGTGTTGCCGTCTCATCCACATCCTTTTCCTCATCGGCCACCATGCCCTCTGCCCCGCCTCCAGCTAATCTCAACCCGGCAGGCCCTACCATCCAGCGGCCGGTGCCCGTCAACCCTTGGGCAGCAATGTTGAATCAACACCGTGGCCGGCCATAA 933 0.523 MSEKDDGLGLGLSLKLGWGENDDDNNNNLNHHQQQQYPFYVHKPPQSVPNQRASFNNLFHFHDRSSETRSFLRGIDVNLPPPPPSAVVDDENAVSSPNSTISSISGKRSEREGNGDENERTSSSRGGGSDDDDGGACGGDGDGEASRKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCENLTEENRRLQKEVQELRALKLSPQLYMNMNPPTTLTMCPSCERVAVSSTSFSSSATMPSAPPPANLNPAGPTIQRPVPVNPWAAMLNQHRGRP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01077 310 MobiDBLite consensus disorder prediction 20 36 - -
Gma03g01077 310 Pfam HD-ZIP protein N terminus 1 112 IPR006712 GO:0005634
Gma03g01077 310 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Gma03g01077 310 PANTHER - 4 304 - -
Gma03g01077 310 SUPERFAMILY Homeodomain-like 129 204 IPR009057 -
Gma03g01077 310 Gene3D - 138 208 - -
Gma03g01077 310 MobiDBLite consensus disorder prediction 82 149 - -
Gma03g01077 310 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Gma03g01077 310 MobiDBLite consensus disorder prediction 1 36 - -
Gma03g01077 310 MobiDBLite consensus disorder prediction 109 127 - -
Gma03g01077 310 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Gma03g01077 310 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Gma03g01077 310 Coils Coil 209 239 - -
Gma03g01077 310 SMART HOX_1 145 207 IPR001356 GO:0003677
Gma03g01077 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 304 - -
Gma03g01077 310 MobiDBLite consensus disorder prediction 91 108 - -
Gma03g01077 310 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Gma03g01077 310 CDD homeodomain 147 204 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01077 Gma-Chr3 35497912 35500847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01077 30 302 Homeobox Transcription Factor Family AT3G60390 61.324 1.62e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma03g01077 HD-ZIP_N 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01077 K09338 - gmx:100798480 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01077 03 35497912 35500847 Gma03g01077 03 35497912 35500847 ECH
Gma03g01077 03 35497912 35500847 Gma07g01022 07 11985920 11989531 GST
Gma03g01077 03 35497912 35500847 Gma18g02327 18 57087634 57091355 PCT
Gma03g01077 03 35497912 35500847 Gma09g02214 09 47670481 47673994 PCT