Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01058 ATGGCCACCACGATATCTTGTGATTTCTCTTCAGTGGAATCTATTCAACACTATCTTCTTGAGCTTGAACACGATTTCAACACACTCATGAACGCTTCCAATCACGAAATTTGCTATTCTCCAACGTACAATTCATTCCCAAGCTCTACTACGTTCCGCTTGGAAGGTGTCCATGATGCAGAAGGGTCGTTAGCATGCAAAAGAGAACACCCTAAGGTGGAGCGTGAATTTCACGCGCCACCAGCATGGAAGCGTTACCGGGGCGTGAGGCGTAGACCTTGGGGCAAGTTCGCGGCGGAAATAAGAGATCCAAAGAAGAATGGTGCTAGGATATGGCTTGGGACTTACGAAACTGAAGAAGAAGCGGGTTTAGCTTATGATAGAGCTGCTTTTAAGATGCGTGGCAGCAAAGCTAAGTTAAATTTTCCTCACCTCATTGGTTCTCACGCGCCTCTGAAGCCGATAAGAGTATTGACAAAGACTTTGAAGCAAAATTTGTTAGAGTCTGATTTGTCATACTCATCGGCTCCACAGACGCAAGAGTCAAAGAAGAGAAAAAATTTGACCGACTTGTTGAACAGGTTGGCCAAGAATAGGAAACAAGTGGAGGTGTTTGAAATGAGTTTACATGCATCAAATGATGTCAATGTTGATCAATGGTGGAGTAATTAA 672 0.439 MATTISCDFSSVESIQHYLLELEHDFNTLMNASNHEICYSPTYNSFPSSTTFRLEGVHDAEGSLACKREHPKVEREFHAPPAWKRYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPLKPIRVLTKTLKQNLLESDLSYSSAPQTQESKKRKNLTDLLNRLAKNRKQVEVFEMSLHASNDVNVDQWWSN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01058 223 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Gma03g01058 223 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Gma03g01058 223 PRINTS Ethylene responsive element binding protein signature 125 145 IPR001471 GO:0003700|GO:0006355
Gma03g01058 223 PANTHER DNA-BINDING DOMAIN 1 200 IPR044808 GO:0003700|GO:0009873
Gma03g01058 223 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Gma03g01058 223 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Gma03g01058 223 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Gma03g01058 223 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
Gma03g01058 223 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 200 - -
Gma03g01058 223 CDD AP2 84 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01058 Gma-Chr3 35296063 35297103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01058 85 157 AP2-EREBP Transcription Factor Family AT2G44840 79.452 2.66e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g01058 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01058 K09286 - gmx:100527194 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01058 03 35296063 35297103 Gma03g01058 03 35296063 35297103 ECH