Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01055 ATGGCTGCTACAACATCTTGTGATTTTTCTTCGTTGGAACCTCTTCAACACTATCTGCTTAAACATGGTTCCAAACACTTGGTCTCTAATGGCGTGGAGAGCATCAATGATGCAAAGAAATTGTCAGAGTGCAAAAGGGATCAGCCTAGGGCATCACCTGAAGTTCACGCGCCACCCAAATGGAAGCACTACCGTGGCGTGAGGCGAAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACCCGAACAAAAACAGTGCTAGGGTTTGGCTTGGGACTTATGTTACTGAAGAAGAAGCAGGTTTGGCTTATGATAGAGCAGCTTTTAAGATACATGGCAGCAAAGCTAAGCTGAATTTTCCTCATCTCATTGGCTCTGACTATTCAAAAAAGGTGGGTGAGAATGTTGTGGCTCCAATGATGTATCCTATTGCTAAGGCGGGGACTTCCATAGGAGTTGCACCTCCGCCCAAGAAGCGCCCTGTGCTGAAGGAGAAACGCTTGCCTCCCCCTATCATGCTTCCTGGGTACATTAAGGGTGACGACGATGCCTTTGCATTTTTGAGACCTGAGCTTGTAACCTTTACAATATCAAAGAGAAGTCAGTCTAGTCCTCTACAACAATCTCTCTGTTTTTCTGATCAGTCGGTTGCTCCATTGCTATTGTATTCGCTTCAGTTGTCGTTATTGCTATAA 696 0.4655 MAATTSCDFSSLEPLQHYLLKHGSKHLVSNGVESINDAKKLSECKRDQPRASPEVHAPPKWKHYRGVRRRPWGKFAAEIRDPNKNSARVWLGTYVTEEEAGLAYDRAAFKIHGSKAKLNFPHLIGSDYSKKVGENVVAPMMYPIAKAGTSIGVAPPPKKRPVLKEKRLPPPIMLPGYIKGDDDAFAFLRPELVTFTISKRSQSSPLQQSLCFSDQSVAPLLLYSLQLSLLL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01055 231 PANTHER DNA-BINDING DOMAIN 1 129 IPR044808 GO:0003700|GO:0009873
Gma03g01055 231 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Gma03g01055 231 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Gma03g01055 231 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Gma03g01055 231 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Gma03g01055 231 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 129 - -
Gma03g01055 231 CDD AP2 62 123 IPR001471 GO:0003700|GO:0006355
Gma03g01055 231 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Gma03g01055 231 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gma03g01055 231 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01055 Gma-Chr3 35249440 35251547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01055 56 126 AP2-EREBP Transcription Factor Family AT2G44840 79.167 3.79e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g01055 AP2 7.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01055 K09286 - gmx:100793710 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01055 03 35249440 35251547 Gma07g01036 07 12171927 12172638 GST
Gma03g01055 03 35249440 35251547 Gma18g02315 18 56982976 56983957 PCT