Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01054 ATGGAGAATAATACAATATATTGCGATCTTTCTCCATTGGAATCTGTTCAACACTATCTTCTAGAGCATGAAAATGATTCCAACACTATCTCCAATGTCTCCAACCACGAAATCTGCTTGGAAGGTGTCCACGACTCAAAGGGTTTATTTTCATGCAAAAGTGAACAGCATGTGGACGCGCGTGAATTTCACACGCATCCGGTATGGAAGCATTACCGGGGCGTGAGGCGGAGGCCGTGGGGAAAGTTCGCGGCGGAGATATGGGTCCCAAAGAGCAAAGGTGGAAGGGTTTGGCTTGGGACTTATGAGACTGAAGAAGAAGCAGGTTTAGCTTATGATAGAGCTGCTTTCAAGATGCGTGGTAGCAAAGCAAAGTTGAATTTTCCTCACCTGGTTGgtgaaATTGAGGGGTTGTTGGTTGTCATGAATTTTATTTTAGAGTCTTCATCTATAAAAACCCATGAGAGGAAATGA 474 0.4367 MENNTIYCDLSPLESVQHYLLEHENDSNTISNVSNHEICLEGVHDSKGLFSCKSEQHVDAREFHTHPVWKHYRGVRRRPWGKFAAEIWVPKSKGGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLVGEIEGLLVVMNFILESSSIKTHERK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01054 157 PANTHER ETHYLENE RESPONSE FACTOR 35 138 - -
Gma03g01054 157 PANTHER DNA-BINDING DOMAIN 35 138 IPR044808 GO:0003700|GO:0009873
Gma03g01054 157 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Gma03g01054 157 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Gma03g01054 157 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Gma03g01054 157 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Gma03g01054 157 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Gma03g01054 157 Coils Coil 156 157 - -
Gma03g01054 157 CDD AP2 70 131 IPR001471 GO:0003700|GO:0006355
Gma03g01054 157 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Gma03g01054 157 PRINTS Ethylene responsive element binding protein signature 111 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01054 Gma-Chr3 35204478 35205491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01054 71 133 AP2-EREBP Transcription Factor Family AT2G44840 79.365 1.81e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma03g01054 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01054 K09286 - gmx:100793895 289.271