Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01049 ATGACCAATGATGTTTCTTGTGTACAATCGTACGAGCTTGAACATGATTCCCACACTCTAATGAATGTTTCCGACCACCCAAACAATAATCCGTTTCAAAACCCTACTCATATCGATGACGTGATTCAATTATTTGCATGCGACACGGAAGCGCCTTTGGCAGCGCGTGAGGTGTACGCGCCTCGGAAATGGAAGCGCTTCAGGGGCGTGAGAAGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATATGGGATCCAAAGAAGAAGAATGGAAGGGTTTGGCTCGGGACGTATGAGACTGAAGAGGAAGCTGGTTTAGCTTATGATAGAGCTTGTTTCAAGATGAGAGGTAGTAAAGCAAAGTTGAATTTTCCACACCTAATTGGATCTCACGCGCCGCCTGAGAGAGTGAGTGTGGTGGCCGCACGGAAGCCGAACTCGCCAGAGCCTTGTTTCCTGCCTTCCCCGCCGCCGGTGACCGAAGATAGCTCACAGCCACAAGGGTTGAAGAAAAGGAGGAACCTAGCTGATTTACTTAATAGGTTAGCCAAGAACAGAAGCCAAAGTATGAGTTTAAATTGTAATGAAGCAAATTAA 594 0.4848 MTNDVSCVQSYELEHDSHTLMNVSDHPNNNPFQNPTHIDDVIQLFACDTEAPLAAREVYAPRKWKRFRGVRRRPWGKFAAEIWDPKKKNGRVWLGTYETEEEAGLAYDRACFKMRGSKAKLNFPHLIGSHAPPERVSVVAARKPNSPEPCFLPSPPPVTEDSSQPQGLKKRRNLADLLNRLAKNRSQSMSLNCNEAN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01049 197 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Gma03g01049 197 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gma03g01049 197 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Gma03g01049 197 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 7 187 - -
Gma03g01049 197 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Gma03g01049 197 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Gma03g01049 197 CDD AP2 65 126 IPR001471 GO:0003700|GO:0006355
Gma03g01049 197 PANTHER DNA-BINDING DOMAIN 7 187 IPR044808 GO:0003700|GO:0009873
Gma03g01049 197 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Gma03g01049 197 MobiDBLite consensus disorder prediction 143 169 - -
Gma03g01049 197 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01049 Gma-Chr3 35125188 35125781 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01049 59 129 AP2-EREBP Transcription Factor Family AT2G44840 76.389 1.07e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma03g01049 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01049 K09286 - gmx:100792115 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01049 03 35125188 35125781 Gma18g02314 18 56977810 56978758 PCT
Gma03g01049 03 35125188 35125781 Gma09g02221 09 47734946 47735807 PCT