Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01047 ATGAGCTCTCATGCTTTAAACACCAATGTGAATGCTCTTGATCACTTTGAGATACCCGTAACGACGCCGTTTCAGGACGTTTCTGCATCGGTGCCGTCCATAGCAGCGTTCTGCCGGAGTTCTAGCTTCCGGAACATTTTCTTGACAGAGAATTGGGCGGAGCTGCCGTTGAAGGAGAACGACACCAATGACATGGTCATCTACGGTGCTTTGCGTGATGCTGCTGCCACCGGATGGTTCCCCGCCAATGGAAATGAGGTGAGTAATGTTAGTGTAGCTGTGAAAATGGAAAATGAGGGTCAAAATAGTAAAACTACAGCCGCGCGTGGCACTCGCACGCCTCCAAAGAAGGGGTTGAGCTACCGAGGCGTGCGGAGGAGGCCGTGGGGGAAGTATGCGGCGGAGATTAGGGACACTAAGAGGAATGGTGTGAGAGTGTGGCTTGGAACCTACGAAACCGCTGAGGATGCAGCTTTAGCTTATGATCGAGCTGCATTTAAGATGCGGGGCTCAAAAGCTAAGCTGAATTTTCCTCATTTAATTGGCTCGGATCATGAGCCAATTAAGGTTACGCTAAAGAAACATTGA 588 0.5 MSSHALNTNVNALDHFEIPVTTPFQDVSASVPSIAAFCRSSSFRNIFLTENWAELPLKENDTNDMVIYGALRDAAATGWFPANGNEVSNVSVAVKMENEGQNSKTTAARGTRTPPKKGLSYRGVRRRPWGKYAAEIRDTKRNGVRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLIGSDHEPIKVTLKKH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01047 195 MobiDBLite consensus disorder prediction 98 119 - -
Gma03g01047 195 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Gma03g01047 195 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Gma03g01047 195 PANTHER BNAC04G53270D PROTEIN 26 190 - -
Gma03g01047 195 CDD AP2 121 180 IPR001471 GO:0003700|GO:0006355
Gma03g01047 195 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Gma03g01047 195 PRINTS Ethylene responsive element binding protein signature 160 180 IPR001471 GO:0003700|GO:0006355
Gma03g01047 195 PANTHER DNA-BINDING DOMAIN 26 190 IPR044808 GO:0003700|GO:0009873
Gma03g01047 195 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Gma03g01047 195 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Gma03g01047 195 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01047 Gma-Chr3 35060266 35061474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01047 37 194 AP2-EREBP Transcription Factor Family AT2G44840 54.717 6.23e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g01047 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01047 K09286 - gmx:100793366 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01047 03 35060266 35061474 Gma07g01040 07 12276061 12277037 GST