Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01044 ATGGCTAGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAAGAAGGCCAATGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCGTACGTTTTTTTTATTCTCTATCTCATCCAACAAACCCTACCTACCTATCTTCTCTCTTATGTCTTTTTTCTTTTTTCAAGAACAAAGCAATTCTTCGATCAATACCAGATGACTCTGGGAGTTGATATTTGGAACTCTCATTACGAGAGAATGGGAGATTGTCTGAATGAGCTGGGCATGGAAGATCTCAGGCTCCTTGAGGAAGGAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGCTTAGAGAACTAGTACTACAGGATATTGGTACTTATGACTGGCCAGTTGAAGAATGCCATTATTGTTGTCGATGCCTTGTCTGTATGATTCTTGTTGCTTTGACAGGTGAAAAAGGGAAGTTTGATGAGTTGCTTGAGGATAAGGGTGTTAATATATTGATTGATCCAAAGGCCCATATGAATGTCATTGGAACTAAAATGGATTTTGTAGATGACAAACTAAGATTTAGCCACATAACAAAGGGTGAAGATGGAAACTGGGCATGGCTTGGTATGCTTGCTTCAGAGCTGTGGTTTGGCTTTTACTGGGTCCTTACTCAAGCCCTTAGATGGAACCTTGTGTTCAGACAACCCTTCAAAAACAGACTCTCTCAAAGATATGAGAAAAAGTTGCCAAGAGTGGACATATTTGTGTGCACAGCAGATCCAGATATTGAGCCAGCAATGATGGTGATTAACACAGTGCTATCTGTTATGGCTTATGATTATCCAACTGAAAAATTGAGTGTGTATCTCTCTGGTGATGTTGGATCGCAAATCACGTTCTATGCTCTGCTAAAGGCTTCAAACTTTGCAAAACATTGGGTCCCATTCTGCAAGAGGTTCAAAGTGGAACCCAGGTCACCATCTGCATATTTTAAAAGCATAGTCTCATCAGGTTACCCTACAGACCCAAGTCAAGCCAAAGAACTGGGAGCTATTAAGAATGGGAAGCAAATGGTTGAAGAATGGGCTTTGACAGCCTTAGCATATGTTGCAGATTCTTCAGAGGTGCAATTTCAGAAGTATTATGATGTTGTGATGCCATACTTAAAAGCTATTTTGGTGAACGCAAATGATAAATCTAATCGTATGCTTCGAGCCAAAGCAATGGAGTGCATTAGTTTGGTAGGAATGGTTGTTGGAAAGGAGAAGTTCAGGGATGATGCCAAACAGGTCATGGATGTCTTGATGTCACTGCAACAATCTCAACTGGATGCTGATGATCCAACTGCAAGTTACATGTTACAAGCATGGGCACGGCTTTGCAAGTGCCTTGGGCAGGATTTTCTCCCATATATGGGTTTTGTGATGCCTCCTTTGCTCCAGTCTGCACAACTGAAGCCCGATGTGACCATTACATCAGCGGATTCTGATACTGAATTTGATGAAGATGATGACAGGTGCCCTTTCAGTTATTGTTACTGA 1569 0.42 MARGKIQIKRIENTTKKANELTVLCDAKVSIIMFSSTGKLHKIEQSYVFFILYLIQQTLPTYLLSYVFFLFSRTKQFFDQYQMTLGVDIWNSHYERMGDCLNELGMEDLRLLEEGMDKAAKVVRERKLRELVLQDIGTYDWPVEECHYCCRCLVCMILVALTGEKGKFDELLEDKGVNILIDPKAHMNVIGTKMDFVDDKLRFSHITKGEDGNWAWLGMLASELWFGFYWVLTQALRWNLVFRQPFKNRLSQRYEKKLPRVDIFVCTADPDIEPAMMVINTVLSVMAYDYPTEKLSVYLSGDVGSQITFYALLKASNFAKHWVPFCKRFKVEPRSPSAYFKSIVSSGYPTDPSQAKELGAIKNGKQMVEEWALTALAYVADSSEVQFQKYYDVVMPYLKAILVNANDKSNRMLRAKAMECISLVGMVVGKEKFRDDAKQVMDVLMSLQQSQLDADDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDVTITSADSDTEFDEDDDRCPFSYCY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01044 522 SUPERFAMILY SRF-like 1 49 IPR036879 GO:0003677|GO:0046983
Gma03g01044 522 Gene3D - 343 522 IPR011989 -
Gma03g01044 522 PRINTS MADS domain signature 24 45 IPR002100 GO:0003677|GO:0046983
Gma03g01044 522 PRINTS MADS domain signature 9 24 IPR002100 GO:0003677|GO:0046983
Gma03g01044 522 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Gma03g01044 522 Gene3D - 8 82 IPR036879 GO:0003677|GO:0046983
Gma03g01044 522 Pfam Cellulose synthase 261 342 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma03g01044 522 SUPERFAMILY ARM repeat 362 496 IPR016024 -
Gma03g01044 522 Pfam Interferon-related developmental regulator (IFRD) 360 473 IPR007701 -
Gma03g01044 522 PANTHER BNAC09G37860D PROTEIN 356 508 - -
Gma03g01044 522 PANTHER IMPORTIN BETA 356 508 IPR040122 GO:0006606
Gma03g01044 522 SUPERFAMILY HesB-like domain 159 201 IPR035903 -
Gma03g01044 522 SMART madsneu2 1 46 IPR002100 GO:0003677|GO:0046983
Gma03g01044 522 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 41 IPR002100 GO:0003677|GO:0046983
Gma03g01044 522 Gene3D - 150 208 IPR035903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01044 Gma-Chr3 34996971 35003878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01044 216 342 Glycosyltransferase AT1G55850 64.567 6.86e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma03g01044 IFRD 1.5e-06 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01044 K20222 - gmx:102660346 649.047