LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g01001	ATGCAGCTCACTCACCTGTGCCTTATCATGCCCTCAGATTATGATAAACTAGAGCCACTTCATGCAACTCCACAAACAAATATTAAAGGGTCACAAAAAAAAGTTAAGTCCAGAAAACAACACCCTCAAGGTGCATGTTGTGGAGGCCATGTTGTTGCTACCCTTCTTCATGGTTCTTTGACTAGGTTGTGTGAGACAAAGTGGTGGAACAACCTATGCCAACATGGGACAAGAAGAAAAACCAAGCAGATCAAGAGTTCTTGTGTTGTGTTTCATGACATGGAGGGTGTGCAACTATCTTCCATGATTGGAAAGGACAGCAACATTAATCATCCAAGGATTTTCAGCTATGCTGAGCTCTACATAGGATCAAGGGGTTTCTCTGAGGAGGAGGTTCTAGGAAGTGGAGGGTTTGGCAAAGTGTACAAAGCTGTTATGCCTAGTGATGGAACAGTGGTGGCTGTGAAGTGTTGCTTGGCAGGGAAAGGTGGTCAATTTGAGAAGACTTTTGCTGCAGAACTTGCAGCAGTGGCACACCTTCGCCACAAGAACCTTGTCCCCTTGAGGGGTTGGTGTGTTTTTGAGGATCAACTCTACCTTGTGTATGATTACATGCCTAATTTGAGCCTTGACCGTGTTCTGTTTCGAAAGAACATGAAGGAGGAGCCACTAGGATGGGTGAGGCGTGGGAAGATTGTGAAGGGTTTGGCATGTGCATTGCACTATTTGCATGAGCAGTTGGAGACTCAAATCATCCACAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCTCATTACAATGCTAGGTTGGGGGACTTTGGCTTGGCAAGGTGGCTTGAGCATGAGCTTGAGTATGAGTATGAGACAAGGAAAGAATCAACATCAAGAAAGTTTGAGCATTTCAGACTGAGTGAGACAACAAGGATTGGTGGCACAATTGGTTACTTGCCCCCTGAGAGCTTCCAGAGAAGGAGCATTGCTACCTCAAAATCTGATGTGTTCAGCTTTGGGATTGTTGTGTTGGAGGTGGTTTCTGGAAGAAGGGCTATTGATCTCACATACTCTGATGAGAAAATCATCTTGCTTGATTGGATCAGAAGGCTTAGTGATGAAGGAAGGCTTGTTGCTGCTGTGGACACAAGGGTAACAGATGGTTCCTACAAGGTTTTTGAAATGGAGCATTTGATTCACATAAGCCTCTTGTGCACACTCCATGACCCTCAATTAAGGCCAAGCATGAAGTGGATTGTGGAGGCACTTTCTGACGTGTCAAACAAGTTGCCAACACTCCCTTCATTTCACTGCCATCCTATGTACATCTCTTTGTCTTCCTCTTCTGAGACTAGTCCAAACAGCACAAAAGGCACTGGCACAAGCTCAGGAACAGAAATTGCTACTAGCACTAGCAATCATACTAATTCCAATTCCAAATTTGTCACAGCCACAGGAGAGACTATATATGTAACTGCTGAAGCTGAACACAGAAACAGTGGAACTAGCTCTTCTAAGAGTAGCAAGAGAGTGATGCATCATCAGCCATCATTTGTTGAAGCACCTAGGGAGATACCATACAAGGAGATTGTTTCAGCCACGGGTAACTTCTCAGAGTCCCAAAGGGTGGCTGAGCTTGACTTTGGAACTGCATACCATGGCATCCTTGATGGCCACTACCATGTCATGGTGAAACGCCTTGGCTTGAAGACATGCCCTGCATTGCGCCAAAGATTCTCCAATGAGCTAAGGAACTTGGCAAAACTTCGCCACAGGAATTTGGTGCAGCTTAGAGGGTGGTGCACTGAGCAAGGAGAGATGCTTGTGGTGTATGATTACTCAGCTAGCAGATTTCTTAGTCACCAACTTCACCATCATAACAATGCTACTAAAAATGGTAATTCTGTCCTCAAATGGCATCATAGGTATAACATAGTGAAATCACTTGCATCTGCTCTTCTCTATCTGCATGAGGAATGGGATGAACAAGTCATTCACAGGAACATAACCTCTTCAGCAGTGACTCTTGAACCTGACATGACCCCAAGATTAGGTAGTTTTGCTCTGGCTGAGTTTTTGTCAAGGAATGAGCATGGACATCATGTAATCACCACCAGGAGCAAGTCGGTTTGCGGGATTTTCGGCTACATGTCACCGGAATATGTGGAATCCGGAGAGGCAACCACAGCTGCTGATGTTTATAGTTTTGGTGTTGTGGTGCTTGAGATTGTAAGTGGACTTAAGGCTGTGGATTTTAGGCAACCTGAGGTGCTATTGGTAAAGAAGGTTCATGAATTTGAGATGAGAAAGAGACCACTTGAGGAACTAGCAGATATAGGACTAAATGGAGAGTACAATTACAAGGAACTAATGAGATTGGTAAGCTTAGGAGTTGCATGCACCAGTTCTGACCCAAAATTAAGACCTAGTACTAGGAAGATAGTAAGCATTCTTGATGGCAATGACAAATTAATCATGGGGGAGAACATGGAGAGCAGGGAAGATTGGAGAGAAAGAAATGCTTGCTCTTTGTCACTGGTTAAGAGAATCCAAGCTCTAGGAATACAATGA	2565	0.4433	MQLTHLCLIMPSDYDKLEPLHATPQTNIKGSQKKVKSRKQHPQGACCGGHVVATLLHGSLTRLCETKWWNNLCQHGTRRKTKQIKSSCVVFHDMEGVQLSSMIGKDSNINHPRIFSYAELYIGSRGFSEEEVLGSGGFGKVYKAVMPSDGTVVAVKCCLAGKGGQFEKTFAAELAAVAHLRHKNLVPLRGWCVFEDQLYLVYDYMPNLSLDRVLFRKNMKEEPLGWVRRGKIVKGLACALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYEYETRKESTSRKFEHFRLSETTRIGGTIGYLPPESFQRRSIATSKSDVFSFGIVVLEVVSGRRAIDLTYSDEKIILLDWIRRLSDEGRLVAAVDTRVTDGSYKVFEMEHLIHISLLCTLHDPQLRPSMKWIVEALSDVSNKLPTLPSFHCHPMYISLSSSSETSPNSTKGTGTSSGTEIATSTSNHTNSNSKFVTATGETIYVTAEAEHRNSGTSSSKSSKRVMHHQPSFVEAPREIPYKEIVSATGNFSESQRVAELDFGTAYHGILDGHYHVMVKRLGLKTCPALRQRFSNELRNLAKLRHRNLVQLRGWCTEQGEMLVVYDYSASRFLSHQLHHHNNATKNGNSVLKWHHRYNIVKSLASALLYLHEEWDEQVIHRNITSSAVTLEPDMTPRLGSFALAEFLSRNEHGHHVITTRSKSVCGIFGYMSPEYVESGEATTAADVYSFGVVVLEIVSGLKAVDFRQPEVLLVKKVHEFEMRKRPLEELADIGLNGEYNYKELMRLVSLGVACTSSDPKLRPSTRKIVSILDGNDKLIMGENMESREDWRERNACSLSLVKRIQALGIQ	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma03g01001	854	ProSiteProfiles	Protein kinase domain profile.	127	440	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma03g01001	854	Gene3D	Phosphorylase Kinase; domain 1	493	611	-	-
	Gma03g01001	854	SMART	serkin_6	127	440	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma03g01001	854	SUPERFAMILY	Protein kinase-like (PK-like)	514	817	IPR011009	-
	Gma03g01001	854	SUPERFAMILY	Protein kinase-like (PK-like)	109	448	IPR011009	-
	Gma03g01001	854	ProSiteProfiles	Protein kinase domain profile.	535	823	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma03g01001	854	Gene3D	Phosphorylase Kinase; domain 1	98	204	-	-
	Gma03g01001	854	MobiDBLite	consensus disorder prediction	444	477	-	-
	Gma03g01001	854	Pfam	Protein kinase domain	128	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma03g01001	854	PANTHER	RECEPTOR LIKE PROTEIN KINASE S.2	1	853	-	-
	Gma03g01001	854	ProSitePatterns	Protein kinases ATP-binding region signature.	133	162	IPR017441	GO:0005524
	Gma03g01001	854	PANTHER	-	1	853	-	-
	Gma03g01001	854	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Gma03g01001	854	Pfam	Protein tyrosine and serine/threonine kinase	540	814	IPR001245	GO:0004672\|GO:0006468
	Gma03g01001	854	Gene3D	Transferase(Phosphotransferase) domain 1	617	838	-	-
	Gma03g01001	854	Gene3D	Transferase(Phosphotransferase) domain 1	205	429	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g01001	Gma-Chr3	33813413	33816384	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g01001	504	817	Receptor kinase-like Gene Family	AT5G55830	34.906	2.63e-50	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gma03g01001		PK_Tyr_Ser-Thr	3e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g01001	-		-	gmx:100818547	1692.17