Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01000 ATGGAGGGGGTCATGTCGCAACATATCATGTCACGTGAGGTGAGGGTGGTCGCAAAAAGGAGGAGGGGGAGGGGCATAAAAAGGGGGCAAAGGATGCATTTCATTGGGAGATTGAAGGTTCTTGAGGGGGAGATAAGACACAGCCATGGAAGAAGACCTGCAAGATGTTGCCGACAAATTAAAAACAAACCATACCAGAAATCGCGGTTTTGCCACGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGCATGAAGAAGAAAGGTCCTCCTTTCTGTCCGCCGTATGGACTGCAACAGCCATCATGCACAAGAGGCCCTCATCGAGCTAAGTTTAAGTTCCCCGGATGCCAAAAGATTATAGTTAGCATGAAGTGCTTCTTGGGTGCCATGGACCATTGGCTAACTGCCAACCAGGAAGAGCCTTTTTGTCTAGGGCTACTGCATAGTGTGTTTATTACTCAGAAATATTAG 477 0.4738 MEGVMSQHIMSREVRVVAKRRRGRGIKRGQRMHFIGRLKVLEGEIRHSHGRRPARCCRQIKNKPYQKSRFCHGVPDPKIRIYDVGMKKKGPPFCPPYGLQQPSCTRGPHRAKFKFPGCQKIIVSMKCFLGAMDHWLTANQEEPFCLGLLHSVFITQKY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01000 158 Gene3D Ribosomal protein L10e/L16 49 95 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gma03g01000 158 SUPERFAMILY Ribosomal protein L16p/L10e 52 93 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gma03g01000 158 PANTHER 60S RIBOSOMAL PROTEIN L10 109 128 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gma03g01000 158 PANTHER 60S RIBOSOMAL PROTEIN L10 50 90 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01000 Gma-Chr3 33800669 33803099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01000 50 94 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 79.167 7.99e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01000 K02866 - han:110871853 87.4261