Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00992 ATGGATGAGTCATGGCTAAAATgggtttctattttggacaCTAATGACTATCATTTATTCAGTGAATATGACATGAACTCTGTCGAGGAACAATTGGAGGGAGAGAATTCAGTGGATCCTGGTGAACTCTCATGGGAAAATCACTCTTATTCATATCTCACTAAAGAAAGCACCACCCTTTTGAGCAATTCTTCATCTTTGGAAGAGATCAACACTGGCTTTGATATGACAAGTCTCAAACAAGATGCTTCTCCACAGAAACCGAAGTCTTGCATTCTGTCTTTTGAGGATTCCACTTTAGTGCCAATTAATCCCAAGAAAACATGCCAAATATATGATCATGGTGAACATTCAAAGGAGACACAAGAAAAGCCACACAATAGAAAACCCCTCAAGAGGGGTAGACGCTTTTCTCAGACACTTGATCACATATTGGCTGAAAGAAAAAGGAGAGAGAATATCAGCAGAATGTTCATAGCTCTTTCAGCACTTATTCCAGACTTGAAAAAGATGGACAAGGCTTCTGTCCTTAGCAACGCTATAGAGTATGTGAAATATCTTCAGCAGCATGTGAAAGATTTGGAACAAGAGAACAAGAAGAGAAAGACGGAATCCTTAGGATGTTTCAAAATAAACAAAACCTGTGATGATAAACCTATAAAGAAATGTCCTAAAGTTGAAGCAAGAGTCTCAGGAAAAGATGTTCTCATCAGAGTAACGTGTGAGAAGCAAAAGGACATTGTACTTAAGCTACTGGCCAAGCTTGAAGCTCATAATCTCTGCATAGTGTGTAGCAATGTCTTACCTTTTGGGAATTCCGCTCTCAGCATTACCAGCATTGCTATGATGGACCATGAATTCAGCATGACAGTGGACACGTACGACCTAGTGAAAATGTTGACTGAGGAATTGTTGGAGTGCTGTAAATTGCAACGATAA 939 0.3866 MDESWLKWVSILDTNDYHLFSEYDMNSVEEQLEGENSVDPGELSWENHSYSYLTKESTTLLSNSSSLEEINTGFDMTSLKQDASPQKPKSCILSFEDSTLVPINPKKTCQIYDHGEHSKETQEKPHNRKPLKRGRRFSQTLDHILAERKRRENISRMFIALSALIPDLKKMDKASVLSNAIEYVKYLQQHVKDLEQENKKRKTESLGCFKINKTCDDKPIKKCPKVEARVSGKDVLIRVTCEKQKDIVLKLLAKLEAHNLCIVCSNVLPFGNSALSITSIAMMDHEFSMTVDTYDLVKMLTEELLECCKLQR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00992 312 Gene3D - 138 206 IPR036638 GO:0046983
Gma03g00992 312 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 310 - -
Gma03g00992 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Gma03g00992 312 PANTHER BHLH TRANSCRIPTION FACTOR 1 310 - -
Gma03g00992 312 Coils Coil 184 204 - -
Gma03g00992 312 SMART finulus 144 193 IPR011598 GO:0046983
Gma03g00992 312 Pfam Helix-loop-helix DNA-binding domain 143 188 IPR011598 GO:0046983
Gma03g00992 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 204 IPR036638 GO:0046983
Gma03g00992 312 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00992 Gma-Chr3 33699536 33703058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00992 120 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.788 3.99e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g00992 HLH 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00992 - - gmx:100815351 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00992 03 33699536 33703058 Gma07g01075 07 13562582 13565903 GST