Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00960 ATGGAACCTGCTGAGAGCAGGAGGCCATTTTGTGCTCTCCTTGACGTTGGTCTTATTAGGACTACAACTGGTAACCATGTGTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGTGACAAGAGGTTTGTTGGGTTTTATAAGGAGAAGAAGGAGCTTGATGCAGAGGTTCATCTCAAATATGCTTTTGGTGGACATAATGGTATTGAGGCACTGTATAAGAAGGTTCATGCTGCCATCCAGGCTGATCCTACTCTCAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGgtacaacttgaagaagctgacctatgaggacaggaaggctaagtttatttcacgcgtggcgactctcaactctactgccgataacaatgaagatgatgagtga 414 0.3502 MEPAESRRPFCALLDVGLIRTTTGNHVFGALKGALDGGLDIPHSDKRFVGFYKEKKELDAEVHLKYAFGGHNGIEALYKKVHAAIQADPTLKKSDKQPPKEHKRYNLKKLTYEDRKAKFISRVATLNSTADNNEDDE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00960 137 SUPERFAMILY Translational machinery components 6 91 - -
Gma03g00960 137 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 4 44 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma03g00960 137 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 71 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma03g00960 137 PANTHER RIBOSOMAL PROTEIN L5-RELATED 72 136 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma03g00960 137 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 71 - -
Gma03g00960 137 PANTHER PROTEIN L5, PUTATIVE-RELATED 72 136 - -
Gma03g00960 137 PRINTS Ribosomal protein L5 signature 13 32 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma03g00960 137 PRINTS Ribosomal protein L5 signature 33 52 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gma03g00960 137 Pfam Ribosomal L18 C-terminal region 74 127 IPR025607 -
Gma03g00960 137 Gene3D - 73 130 - -
Gma03g00960 137 Gene3D - 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00960 Gma-Chr3 33041441 33042364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00960 1 127 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 60.510 5.83e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00960 K02932 - gmx:100817746 226.868