Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00880 ATGGGACTCAAGGGCCAGTTTCCTCGCGGCATTCAAAATTGCTCAAGCTTAACTGAATTAGACCTTTCAATTAACAAACTCCCTGGAACCATTTCGGGAGACATAGCCACTCGTATACCATTTGCAACATCTGTTATTCTAGCTTCAAATGAATTTTCTGGGGAGATTCCTGTGAGTCTTGCAAACTGTAAATTTCTTAATACCCTTAAACTCGATCAGAATCGACTCACTGGTCAAATTCCTCCACAATTTGGTGTTCTCTCACGAATCAAGACATTTTATGTATCCGACAATCTTTTGATGAGGCCAGTTCCAATCTTTAGCGCTGGAGTTTCAAAAAATTATGCAAATAACCAAGGCCTATGTGGAGGAAAATCATTCGCGCCTTGCAAGGCGAAGTCTTCCAAGAGTAACTTGGTTGTTATTGCTGGAGCTGCTGTTGGCGGGGTGACTCTTGCGACATTAGGATTGTGTATTGGATTGTTCTTCTTTGTGCGACGTGTTTCTTTCAAGAAGAAGGAAGAGGACCCCGAAGGAAACAAATGGGCAAGAAGTCTAAAAGGAACTAAACAAATTAAGGCAAGCTATATTGGATTTTGCATGGCCAAAAGGGAGAGGCTTTTGGTCTATAAAAACATGCCAAATGGAAATCTCCATGACCAACTCCATCATGCTGATGGTGTGAGCACCCTTGACTGGACTACAAGGCTCAAAATTGCAATTGGAGCAGCCAAAGGTTTAGCATGGCTTCATCATAGCTGCAATCCCCATATTATCCATCAAAACATTAGCTCGAAGTACATCTTGTTGGATGCAGATTTTGAGCCAAAAATTTCTGATTTTGGCCTTGCCAGACTGATGAAACCAATTGATACTCATTTGAGTACTTTTGTAAATGAGGAGTTTGGTGAAAGACCTACCAATGCGTCTAAAGCTCCAGAAACTTTTAAAGGAAATCTGGTAGAATGGATTACGGAGCTCACAAGCAATGCAGAACACCATGATGCCATTGATGAATCACTAGTCAGCAAGGATGCTGATAGCGACCTTTTCCAATTTCTAAAGGTTGCATGCAATTGTGTCTCACCAACGCCAAAGGAGAGGCCCACCATGTTTGAAGTGTATTAG 1128 0.4176 MGLKGQFPRGIQNCSSLTELDLSINKLPGTISGDIATRIPFATSVILASNEFSGEIPVSLANCKFLNTLKLDQNRLTGQIPPQFGVLSRIKTFYVSDNLLMRPVPIFSAGVSKNYANNQGLCGGKSFAPCKAKSSKSNLVVIAGAAVGGVTLATLGLCIGLFFFVRRVSFKKKEEDPEGNKWARSLKGTKQIKASYIGFCMAKRERLLVYKNMPNGNLHDQLHHADGVSTLDWTTRLKIAIGAAKGLAWLHHSCNPHIIHQNISSKYILLDADFEPKISDFGLARLMKPIDTHLSTFVNEEFGERPTNASKAPETFKGNLVEWITELTSNAEHHDAIDESLVSKDADSDLFQFLKVACNCVSPTPKERPTMFEVY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00880 375 PANTHER RECEPTOR-LIKE PROTEIN 55 196 304 - -
Gma03g00880 375 PANTHER RECEPTOR-LIKE PROTEIN 55 303 375 - -
Gma03g00880 375 PANTHER LRR RECEPTOR-LIKE KINASE 196 304 - -
Gma03g00880 375 Pfam Protein tyrosine and serine/threonine kinase 195 292 IPR001245 GO:0004672|GO:0006468
Gma03g00880 375 Gene3D Ribonuclease Inhibitor 2 139 IPR032675 -
Gma03g00880 375 PANTHER LRR RECEPTOR-LIKE KINASE 1 191 - -
Gma03g00880 375 PANTHER LRR RECEPTOR-LIKE KINASE 303 375 - -
Gma03g00880 375 PANTHER RECEPTOR-LIKE PROTEIN 55 1 191 - -
Gma03g00880 375 SUPERFAMILY L domain-like 3 106 - -
Gma03g00880 375 Gene3D Transferase(Phosphotransferase) domain 1 303 375 - -
Gma03g00880 375 Gene3D Transferase(Phosphotransferase) domain 1 213 302 - -
Gma03g00880 375 SUPERFAMILY Protein kinase-like (PK-like) 195 374 IPR011009 -
Gma03g00880 375 SMART tyrkin_6 136 372 IPR020635 GO:0004713|GO:0006468
Gma03g00880 375 ProSiteProfiles Protein kinase domain profile. 136 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00880 Gma-Chr3 31573423 31575343 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00880 1 375 Receptor kinase-like Gene Family AT1G27190 30.847 2.33e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Gma03g00880 PK_Tyr_Ser-Thr 5.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00880 - - gmx:100305365 605.905