LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g00841	ATGGCGGATTCTGACAACGACTCTGGTGGCGCACACAACAGCGGTAAGGGGGGCAAGGTGTTGCCACGGGAGCTGGACCGGTTTCTCCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCGCTGCTGGCAAACGCGAAGATCTTGAAGTACGCAAAGGAGACGGTGCAGGAGTGCGTGTCAGAGTTCATCAGCTTCATCATCGACGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGGTGATCAACGGCGACGACCTGCTCTGGGCGATGACCACTCTAGGCTTCGAGGACTATGTGGAGCCTCTCAAAGGCTACCTCTAG	327	0.5841	MADSDNDSGGAHNSGKGGKVLPRELDRFLPIANVSRIMKKALLANAKILKYAKETVQECVSEFISFIIDEASDKCQREKRKVINGDDLLWAMTTLGFEDYVEPLKGYL	108

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma03g00841	108	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	28	92	IPR003958	-
	Gma03g00841	108	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	1	108	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Gma03g00841	108	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gma03g00841	108	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2	1	108	-	-
	Gma03g00841	108	SUPERFAMILY	Histone-fold	26	108	IPR009072	GO:0046982
	Gma03g00841	108	PRINTS	CCAAT-binding transcription factor subunit A signature	56	74	-	-
	Gma03g00841	108	PRINTS	CCAAT-binding transcription factor subunit A signature	75	93	-	-
	Gma03g00841	108	PRINTS	CCAAT-binding transcription factor subunit A signature	94	108	-	-
	Gma03g00841	108	Gene3D	Histone, subunit A	22	108	IPR009072	GO:0046982

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g00841	Gma-Chr3	30376428	30376754	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g00841	1	108	CCAAT-HAP3 Transcription Factor Family	AT4G14540	83.333	3.85e-59	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Gma03g00841		CBFD_NFYB_HMF	1.8e-22	CL0012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g00841	K08065		-	gmx:100813580	187.963