Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00830 ATGGTGTCCCACCGACTTCCCACCACACCAAAGAATAGCTTTAAGGCTACCATGTTTTTTTCAACATGGTCCACTGTGGTTCCAAACTGTCACTTTGATGCAATTCTTTATGTGCTCTTGATGCTACGGGCCTTTTGGGACAAGAGGATTTCACAGGAGGTCAGCGGAGATGCTCTCGGTGAGGAGTTTAAAGGATATGTCTTCAAAATCACTGGTGGTTGTGGCAAACAAGGATTCCCAATGAAGCAGGGGGTGCTAACACCTGGCCATGTTCGTCTTTTGCTCCACAGAGGAACTCCTTGCTTCTGTGGGTACGGAAGGCACAATGGAGAGCGTAGGAGGAAGTCTGTTCCTGGGTGCATTGTCAGCCCAGATCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGAGAAAATGATTTACCAGGGCTGACTGATGTTGAAAAGCCAAGAATGAGGGGTCCAAAGAGAGTGTCCAAAATCCGTAAGCTGTTCAACCTGTCTAAGGAAGATGATGTGAGGAATTATGTCAACACATACCGTTGA 546 0.467 MVSHRLPTTPKNSFKATMFFSTWSTVVPNCHFDAILYVLLMLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCGKQGFPMKQGVLTPGHVRLLLHRGTPCFCGYGRHNGERRRKSVPGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRVSKIRKLFNLSKEDDVRNYVNTYR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00830 181 Gene3D - 151 181 - -
Gma03g00830 181 ProSitePatterns Ribosomal protein S6e signature. 70 81 IPR018282 GO:0003735|GO:0005840|GO:0006412
Gma03g00830 181 PANTHER 40S RIBOSOMAL PROTEIN S6 42 181 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma03g00830 181 Pfam Ribosomal protein S6e 42 146 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma03g00830 181 SMART Ribosomal_S6e_2 32 146 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gma03g00830 181 PANTHER 40S RIBOSOMAL PROTEIN S6 42 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00830 Gma-Chr3 30153567 30156074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00830 81 181 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 90.099 5.92e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00830 K02991 - gmx:100804076 271.937