Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00793 ATGGAAAACCAGTTCTTTCTGAATTCTGGGGTGTCACAAACACAGCACCACCACCCTCTTCACTTAGAATCTTCACCACCATCCAATCCTTCTTCAGTGCCCTCTTGGCAATCACTCTCACCACCAAACATGGGGATTCAACCAACAGTTATGAATTGTGCCTCTGAGCAAACACAACAAGATTGCTTTTACAACTCCAATTGGGACAAGTCAACAACAACAGATCAAGGCCTTCACCACTTTGATTCCTCAGCACTGAGTTCAATGGTCTCATCACCAGCAGCATCATCCAACCCCAACAACAACATGTCCAATGAGAATTTCATCATCCGGGAATTGATGGGGAAATTGGGAGCTATTGGGAACTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCATCTTCTTACATGAATACTAAAGGCAATAACAGCACCAACACTTCATGCTACAGCACCCCTTTGAGCTCCCCTCCAAAGGTGAACATTGTCAACAGCTTGGTGAATTTGAGGTTGGCAAATTTGGGAGGGGGAAAGTCAACAACAACGGTTTTGAATTCCAGTGTGGCTGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGATAGGAGTGTCCAATTGAGGGTGAACAATGCTGAATTGGCTCAAAGATCTGCACCAGCAATGGAACATGGTGGGAAGTTACCTAGAGTCTCAAGCAGTCCATTGCTCAAAACACTTGGATCTCAAATGGGTGCCCAAGAGAACAAGAATTCAGCAATTCATCAGGAGCAGGAGAAAATGGAAGGGGCCAATTCTCAAGAGGAATCTACAATTTCTGAGCAAACCCCAAATGGGGAAATTGGGGTGAAAACTTCCCAAGATATTATGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAAACACTACTAATCCTACCAAGGGTGTTGAAGGCAGTGAGTATTCAAATTCAAAGCGCAGCAAGCCAAATGAGGGAAATGAAAATGGCCAAGTGAAGGTTGAGGAAGAGTCCAAAGCAGAGGAAGAGAAACAGAGCAAAAGTAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCACGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTAGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAACGTCAAGTTGAGTTTCTGTCTATGAAATTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGAGAGTCTTGTTACAAAAGATGTATTCCAATCAAACAATTCTTTGGCAACACACCCAAATGCAATAATATTCCCATTAGGTTCCTCAGCACAAGCCTTTTATGGGCACCAGCCTCAGCAAAACAACCCAGTTTTCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGATACTTCTTTGTGCCAAAATCTTGCCATGCAGTTATCTCCGCTAGATGTGTTTAATGAAGGTGGCTCTCAGTTTCCATTAGCATTCTTAGAGGATGATCTCCACACCATTGTTCAGATGGGGTTTGGCCAAGCTGCTAACAGGAAAACACCAATACAATCCTCGAGTTTCAACGGTTCAAATAATGTACCACAGATGAAAGTAGAGCTCTGA 1785 0.4359 MENQFFLNSGVSQTQHHHPLHLESSPPSNPSSVPSWQSLSPPNMGIQPTVMNCASEQTQQDCFYNSNWDKSTTTDQGLHHFDSSALSSMVSSPAASSNPNNNMSNENFIIRELMGKLGAIGNSDEIPQHSPHPLVVASSYMNTKGNNSTNTSCYSTPLSSPPKVNIVNSLVNLRLANLGGGKSTTTVLNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSVQLRVNNAELAQRSAPAMEHGGKLPRVSSSPLLKTLGSQMGAQENKNSAIHQEQEKMEGANSQEESTISEQTPNGEIGVKTSQDIMNSRKRKASSKGKAKETSNTTNPTKGVEGSEYSNSKRSKPNEGNENGQVKVEEESKAEEEKQSKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLVTKDVFQSNNSLATHPNAIIFPLGSSAQAFYGHQPQQNNPVFHNNIPNRTVTHCSVDPLDTSLCQNLAMQLSPLDVFNEGGSQFPLAFLEDDLHTIVQMGFGQAANRKTPIQSSSFNGSNNVPQMKVEL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00793 594 PANTHER BHLH TRANSCRIPTION FACTOR 2 587 - -
Gma03g00793 594 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 459 IPR036638 GO:0046983
Gma03g00793 594 MobiDBLite consensus disorder prediction 281 304 - -
Gma03g00793 594 Pfam Helix-loop-helix DNA-binding domain 394 441 IPR011598 GO:0046983
Gma03g00793 594 Coils Coil 437 457 - -
Gma03g00793 594 CDD bHLH_AtBPE_like 380 465 - -
Gma03g00793 594 SMART finulus 396 446 IPR011598 GO:0046983
Gma03g00793 594 MobiDBLite consensus disorder prediction 573 594 - -
Gma03g00793 594 MobiDBLite consensus disorder prediction 319 350 - -
Gma03g00793 594 MobiDBLite consensus disorder prediction 351 381 - -
Gma03g00793 594 Gene3D - 387 462 IPR036638 GO:0046983
Gma03g00793 594 MobiDBLite consensus disorder prediction 1 49 - -
Gma03g00793 594 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 440 IPR011598 GO:0046983
Gma03g00793 594 MobiDBLite consensus disorder prediction 258 381 - -
Gma03g00793 594 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 587 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00793 Gma-Chr3 28874000 28877738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00793 1 548 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.652 5.55e-100 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g00793 HLH 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00793 - - gmx:100776143 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00793 03 28874000 28877738 Gma16g00776 16 11112404 11115976 GST
Gma18g01434 18 36745692 36748158 Gma03g00793 03 28874000 28877738 PCT
Gma08g03195 08 48702810 48705892 Gma03g00793 03 28874000 28877738 PCT
Gma03g00793 03 28874000 28877738 Gma18g01434 18 36745692 36748158 PCT
Gma03g00793 03 28874000 28877738 Gma08g03195 08 48702810 48705892 PCT