Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00787 ATGGAAGCTAACGGGATTGGTGAACTTAAGATACCTTTGTTGCAGACTCCGGAAGATGGCGCCGTTAGGACAGTTTATTTCCAACTGAGTGACATCAAGTGTGCCTCCTGCGTGAATTCCGTCGAGTCCGTCGTTAAGAACCTTGACGGCGTCAAAAGCATCGCCGTATCGCCACTTGATGGAAGAGCCGCAATCAAGTTTGACCCTAAGTTCGTTACAGTGAAACAAATAAAAGAAAGCATAGAGGAGAGTGGGTTTCGAGTAAATGAGCTTCATGAGCAGGACATAGCAGTGTGCCGAGTGAGGATTAAAGGAATGGCATGCACAAGCTGCTCCGAATCTGTTGAGAATGCCCTTCAAATTGTTGAAGGGGTGAAAAAGGCAATTGTTGGTCTTGCTTTGGAGGAGGCAAAAGTGCACTTTGATCCCAACCTCACCAATGTTGACAAGATAATTGAGGCCATAGATGATGCTGGTTTTGGGGCTGATCTTATTAGCTCTGGGAATGATGCAAACAAAGTGCATCTAAAGCTTGAAGGGGTTGATTCTGCAGAGGATGTAAATGCAGTAATGTCTTCTCTTGAGTTAGCTGTGGGGGTGAACCACGTTGAGATGGATTTGTCAGAACATAAAGTTACTGTTAGCTATGATCCAGACATTACAGGTCCAAGGTCTCTCATTTACTGTGTTCAGGAGGAAGCTAGCTGTGGCTCCAAGAAGTATCAAGCAACCTTGTACTCTCCTTCTGGTCAAAGAGAAAGGGATAAGGTGAATGAAATCCGTATGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCTGTTCCTGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCTTATGGAAACTGGTTAAACTACAAGGTCCACAATATGCTTACTCTTGGGTTGTTTTTAAGATGTATTCTTAGCACGCCTGTGCAGTTCATAGTTGGCAAAAGGTTCTATGTGGGATCATATCATTCACTGAAGCGAAAATCTGCTAACATGGATGTGCTGGTTGCGCTGGGCACAAATGCTGCTTATTTTTACTCTCTCTATATTTTAATAAAAGCGCTGACTTCAGATACATTTGAAGGACAAGATTTCTTTGAGACAAGTTCCATGCTGATATCATTTATTCTATTAGGGAAGTATTTGGAAATTGTTGCTAAAGGGAAAACATCTGATGCTTTAGGAAAGCTGACTCAACTTGTTCCTGATAAAGCTTATTTAGTAGCAATTGATACTGATGGAAATATAATCACAGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGTCCAAAATTCCTGTTGATGGTATAGTTATAAAAGGGCAAAGCTATGCTAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGATAAGGTTATCAGTGGAACCATTAATGAGAATGGCTGCATACTGGTTAAGGCCACACATGTTGGATCTGACACTGCACTTTCTCAAATAGTTCAGCTCGTTCAAGCTGCTCAGCTGGCCAAAGCACCAGTTCAAAAACTTGCCGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGTAGCACTAATTACTTGGCTTGGATGGTTCATTCCCGGGGAAGCTGGTATTTACCCTAAACATTGGATACCAAAAGCAATGGATGCATTTGAGCTTGCTTTGCAGTTTGCTATTTCTGTTCTGGTTGTTGCTTGCCCATGTGCTCTGGGTCTTGCAACACCAACTGCAGTCATGGTTGCTTCTGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGGTAAAAATTGTTGTGTTTGATAAGACTGGGACACTAACAGTTGGGAAGCCAGAGGTAGTTAGTGCAGTGCTGTTTTCTGAATTTTCTATGGAGGAATTATGTGACATGACAATTGCTGTGGAGGCAAGTAGTGAGCACCCAATAGCAAAAGCTGTTGCGGCACATGCAAAGAGGCTGCGCCAGAAATTTGGTTCTTGCACTGAGGAAGTCCCAGATGTGGATGATTTTGAAGTACACATGGGAGCTGGGGTTAGTGGAAAGGTTGGTGATAGAACAGTTGTGGTAGGAAACAGGAGACTCATGCATGCTTGTAATGTTCCAATATGTTCTAAGGTTGAGAAGTACATCTCTGAAAATGAAATTCTGGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGTGCATTCTCTGTAACTGATCCTGTAAAACCAGAGGCTAAACGTGTCATTTCTTTTCTCCATTCTATGGGCATCTCAAGCATCATAGTGACTGGTGATAACTGTGCTACCGCCACTGCTATTGCAAATGAAGTAGGTATTGATGAGGTCTTCGCTGAGATAGATCCTGTGGGCAAAGCTGATAAGGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCGCCAGCCTTGGTTGCTGCTGATGTTGGCATGGCAATTGGTGCTGGAACTGACATAGCTATAGAAGCTGCTGATATAGTTCTGGTCAAAAGCAGTCTGGAAGATGTGATCACAGCCATAGACTTATCAAGAAAGACCATGTCGCGCATCCGGCTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCCGCTGGAGTCTTGTACCCCTTTGCTGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCCTCTCTTAGTGTGGTTTCCTCATCTCTTTTGCTGCAGTTCTATAAAAAACCTCTGCATATAGAATCCTCTTGA 2865 0.4307 MEANGIGELKIPLLQTPEDGAVRTVYFQLSDIKCASCVNSVESVVKNLDGVKSIAVSPLDGRAAIKFDPKFVTVKQIKESIEESGFRVNELHEQDIAVCRVRIKGMACTSCSESVENALQIVEGVKKAIVGLALEEAKVHFDPNLTNVDKIIEAIDDAGFGADLISSGNDANKVHLKLEGVDSAEDVNAVMSSLELAVGVNHVEMDLSEHKVTVSYDPDITGPRSLIYCVQEEASCGSKKYQATLYSPSGQRERDKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKVHNMLTLGLFLRCILSTPVQFIVGKRFYVGSYHSLKRKSANMDVLVALGTNAAYFYSLYILIKALTSDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDTDGNIITETEIDTQLIQKNDIIKIVPGSKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCILVKATHVGSDTALSQIVQLVQAAQLAKAPVQKLADHISRVFVPIVVVVALITWLGWFIPGEAGIYPKHWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKIVVFDKTGTLTVGKPEVVSAVLFSEFSMEELCDMTIAVEASSEHPIAKAVAAHAKRLRQKFGSCTEEVPDVDDFEVHMGAGVSGKVGDRTVVVGNRRLMHACNVPICSKVEKYISENEILARTCILVSIDGKIAGAFSVTDPVKPEAKRVISFLHSMGISSIIVTGDNCATATAIANEVGIDEVFAEIDPVGKADKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFAGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIESS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00787 954 ProSiteProfiles Heavy-metal-associated domain profile. 173 232 IPR006121 GO:0046872
Gma03g00787 954 PRINTS Copper-transporting ATPase 1 signature 24 49 - -
Gma03g00787 954 PRINTS Copper-transporting ATPase 1 signature 50 73 - -
Gma03g00787 954 PRINTS Copper-transporting ATPase 1 signature 121 142 - -
Gma03g00787 954 TIGRFAM TIGR00003: copper ion binding protein 27 88 IPR006122 GO:0005507
Gma03g00787 954 TIGRFAM TIGR00003: copper ion binding protein 101 161 IPR006122 GO:0005507
Gma03g00787 954 CDD P-type_ATPase_Cu-like 267 929 - -
Gma03g00787 954 ProSiteProfiles Heavy-metal-associated domain profile. 24 90 IPR006121 GO:0046872
Gma03g00787 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 371 618 IPR023298 -
Gma03g00787 954 ProSitePatterns Heavy-metal-associated domain. 29 57 IPR017969 GO:0046872
Gma03g00787 954 ProSiteProfiles Heavy-metal-associated domain profile. 98 164 IPR006121 GO:0046872
Gma03g00787 954 ProSitePatterns Heavy-metal-associated domain. 103 132 IPR017969 GO:0046872
Gma03g00787 954 SUPERFAMILY HMA, heavy metal-associated domain 94 168 IPR036163 GO:0046872
Gma03g00787 954 Gene3D - 617 883 IPR023214 -
Gma03g00787 954 Pfam haloacid dehalogenase-like hydrolase 622 847 - -
Gma03g00787 954 PANTHER ATP7, ISOFORM B 16 951 - -
Gma03g00787 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 628 634 IPR018303 -
Gma03g00787 954 Gene3D - 637 766 IPR023299 GO:0000166
Gma03g00787 954 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 339 942 IPR027256 GO:0006812|GO:0016021|GO:0019829
Gma03g00787 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 379 910 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma03g00787 954 PRINTS P-type cation-transporting ATPase superfamily signature 462 476 - -
Gma03g00787 954 PRINTS P-type cation-transporting ATPase superfamily signature 626 640 - -
Gma03g00787 954 PRINTS P-type cation-transporting ATPase superfamily signature 758 769 - -
Gma03g00787 954 PRINTS P-type cation-transporting ATPase superfamily signature 780 790 - -
Gma03g00787 954 PRINTS P-type cation-transporting ATPase superfamily signature 833 852 - -
Gma03g00787 954 PRINTS P-type cation-transporting ATPase superfamily signature 856 868 - -
Gma03g00787 954 CDD HMA 27 88 IPR006121 GO:0046872
Gma03g00787 954 Gene3D - 19 89 - -
Gma03g00787 954 SFLD p-type atpase 608 885 IPR044492 -
Gma03g00787 954 SUPERFAMILY Calcium ATPase, transduction domain A 426 512 IPR008250 -
Gma03g00787 954 Pfam E1-E2 ATPase 411 604 - -
Gma03g00787 954 SUPERFAMILY HMA, heavy metal-associated domain 20 92 IPR036163 GO:0046872
Gma03g00787 954 SUPERFAMILY HMA, heavy metal-associated domain 168 232 IPR036163 GO:0046872
Gma03g00787 954 Gene3D - 170 246 - -
Gma03g00787 954 CDD HMA 101 162 IPR006121 GO:0046872
Gma03g00787 954 SFLD C1.7: P-type atpase like 608 885 - -
Gma03g00787 954 SUPERFAMILY HAD-like 624 939 IPR036412 -
Gma03g00787 954 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 16 951 - -
Gma03g00787 954 Pfam Heavy-metal-associated domain 100 160 IPR006121 GO:0046872
Gma03g00787 954 Pfam Heavy-metal-associated domain 27 86 IPR006121 GO:0046872
Gma03g00787 954 Gene3D - 98 168 - -
Gma03g00787 954 Gene3D - 394 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00787 Gma-Chr3 28549719 28561489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00787 19 948 Primary Pumps ATPases AT1G63440 56.684 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00787 K17686 - gmx:100793894 1810.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00787 03 28549719 28561489 Gma16g00787 16 11315876 11322440 GST