Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00720 ATGTCTCATCAGGAGCAAGCCTTTGTGTCTCTTCTCTCTCAGCTCGCCCTTTCTTTCGACGGTGCCGTTTTGGGCTTGGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCTGCCGCCCTCCGCAAGCTCCACCGCGCCCCTTCTGTCTCCGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGCCGACGGAAACTCCGACGGTGGCAACATCGTAATTGTCCGCGGCACTGTCGATGCCAAGTCCGCCGTCGAAGGCGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAAGTGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCATGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATTGATGTTGGACGGTGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCGTTACCTTTGTCAACAGTTTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGAAAGAATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAGGATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAGTAGATCTTTCCAGCAAAACAAAAATACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGGTCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGACGTTCTGTTTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGCGAAGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGAGATTCAGTGCGGATTTATGAATCTTGA 1167 0.4704 MSHQEQAFVSLLSQLALSFDGAVLGLALAYAAVRTLFKFTATSAALRKLHRAPSVSVSDLRSLLAEIPSDADGNSDGGNIVIVRGTVDAKSAVEGGTWKTLRPGVLVSRESGDKSVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFVLIDVGRWPNAEYVVVNMDGSRHPLPLSTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKNITAVGLCSLKNGIAEIKSCKDLPYFLSDLSKDQMIVDLSSKTKILFWGGIALGSMSVGVLGYAVVRNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00720 388 Pfam E3 Ubiquitin ligase 142 289 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gma03g00720 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 388 IPR013083 -
Gma03g00720 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Gma03g00720 388 SUPERFAMILY RING/U-box 335 381 - -
Gma03g00720 388 SMART ring_2 336 375 IPR001841 -
Gma03g00720 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 381 - -
Gma03g00720 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
Gma03g00720 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00720 Gma-Chr3 24074802 24099698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00720 333 385 C3H Transcription Factor Family AT3G06140 39.623 1.50e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00720 K15688 - gmx:100800058 731.095